DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pde9 and pde1c

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:XP_031759760.1 Gene:pde1c / 100495383 XenbaseID:XB-GENE-994226 Length:762 Species:Xenopus tropicalis


Alignment Length:632 Identity:155/632 - (24%)
Similarity:247/632 - (39%) Gaps:148/632 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   600 NNEYSILQLNNTIIQCHFNDDDFRAL-----VKDLKRKVEYTERMNWLCLS-KRPLGPPHRKSSL 658
            |.||:.     |:::..:.|:..|.|     :.|::.....:|..:||..: .|.:|      .:
 Frog   122 NLEYAA-----TVLESVYIDETRRLLDTEDELSDIQSDSVPSEVRDWLASTFTRQMG------MM 175

  Fly   659 PKHQEVKRRFLEICDTT----FSEEV------RAALRLP-------------AFDSYEWSDADVI 700
            .|..|.|.||..|....    |.|.:      ...|..|             :||.:..:||...
 Frog   176 LKRTEEKPRFRSIVHAVQAGIFVERMYRRTSNMVGLSYPPAVIAVLKNVDKWSFDVFALNDASGD 240

  Fly   701 HLMQTMFVEL----GFIEKFSIPVDTLREWL--YEV--YKHYNEVPFHNFRHCFCVAQMMYAITR 757
            |.::.:|.||    ..|.:|.||:..|..::  .||  .||.|  |:||..|...|.|.::....
 Frog   241 HGLKFIFYELLTRYDLINRFKIPISALVSFVEALEVGYTKHKN--PYHNLIHAADVTQTVHYFLF 303

  Fly   758 QANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINARTELALRYNDISPLENHHCSIAFRLL- 821
            ::.|:..|.:||...::.:...||.:|.|..|.:.|..|::.|:.|||.|.|||||.|.|:||| 
 Frog   304 KSGLVHWLTELEIFAMIFAAAVHDYEHTGTTNNFHIQTRSDSAILYNDRSVLENHHVSAAYRLLQ 368

  Fly   822 EHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQFMEITPIFDYSNRAHINLL----- 881
            :..|.||..|.|:|.:...|..:|..:|||||:.|...:.|..              |.|     
 Frog   369 DDEEMNILYNLSKDDWREFRALVIEMVLATDMSCHFHQIKQMK--------------NALQQPEG 419

  Fly   882 ------CMILIKVADISNEARPMDVAEPWLDRLLQEFFAQSAAEKSEGLPVTPFMDPDKVSKPGS 940
                  ..:|:..||||:.|:..|:...|...||:|||.|...|...|||.:|..|.:......|
 Frog   420 IDKPKALSLLLHTADISHPAKNWDLHHRWTMSLLEEFFRQGDKEAELGLPFSPLCDRNSTMVAQS 484

  Fly   941 QVRFIGLVLLPLFEALGELVPELTELIIIPV-----RIALEYYRRLNDAQTKTRKSVADSNTSAT 1000
            |:.||..::.|.|..|.:::    |.|::|:     |..|..:||            :..|:..|
 Frog   485 QIGFIDFIVEPTFTVLTDMI----EKIVVPLIEEASRSGLTGFRR------------SSLNSITT 533

  Fly  1001 SDSNSGTIDSNAAMVSTPGGASDKLSLDKGQGNSQGSGGGGGGGGGGGAGGGTGSGCGSNAAGSV 1065
            ||....::.|.                                    |:.|.....|........
 Frog   534 SDVKRSSVKST------------------------------------GSEGSASLNCSILTVDFK 562

  Fly  1066 SPQMPRSGSGISVKSRRSIPSQ------KSASRTSVDEPGGMASELHDLPEGSESGDSETATEVD 1124
            |  ...:...:.:::|....:|      :.|.|.:.::......|.|     .|..|.:|....|
 Frog   563 S--FKCTWYDVVLQNREKWKTQAVKDADEKAKREAEEKDKRDPDENH-----QEKEDKKTDENED 620

  Fly  1125 VAEK--TSKFKVDTEGSSNRSKSSHSTSRKSSREKRPSMIGELCSSG 1169
            ..:|  .:|.:.:.|..|..||.:.|:....:..:.|:...:.||||
 Frog   621 KNDKPLLNKHEPNKEHHSGDSKLTESSQGNINGTRLPNAKNQECSSG 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 76/239 (32%)
pde1cXP_031759760.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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