DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pde9 and pde4c

DIOPT Version :9

Sequence 1:NP_727644.3 Gene:Pde9 / 32233 FlyBaseID:FBgn0259171 Length:1623 Species:Drosophila melanogaster
Sequence 2:XP_004911040.1 Gene:pde4c / 100380081 XenbaseID:XB-GENE-1002336 Length:801 Species:Xenopus tropicalis


Alignment Length:673 Identity:150/673 - (22%)
Similarity:279/673 - (41%) Gaps:179/673 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   562 SIKMRASATDIETN----ALNGARDAIVASNNGNNGNNGNNGNNEYSILQLNNTIIQCHFNDDDF 622
            :::.|.|.:::.:|    .||  |:....|....:||.    .:||    :::|.:......:..
 Frog   226 TLQTRHSVSEMASNKFKRMLN--RELTHLSETSRSGNQ----VSEY----ISSTFLDKQHEVEIP 280

  Fly   623 RALVKDLKRKVEYTERMNWLCLSKRPLGP-------PHRKS----SLPK-----HQEVKRRFLEI 671
            ..:.|:..:|             |||:..       .|..|    |:|:     .|||       
 Frog   281 TPVSKEKDKK-------------KRPMSQISGVKKLTHSSSFSNCSIPRFGVKTEQEV------- 325

  Fly   672 CDTTFSEEVRAALR--LPAFDSYEWS-DADVIHLMQTMFVELGFIEKFSIPVDTLREWLYEVYKH 733
               ..::||....:  |..|...|:| :..:..:|.::|.|...::.|.|||||...::..:..|
 Frog   326 ---PLAKEVENINKWGLDIFKVAEYSGNRPLTVIMYSIFQERDLLKTFHIPVDTFITYMMTLEDH 387

  Fly   734 Y-NEVPFHNFRHCFCVAQMMYAITRQANLLSRLGDLECLILLVSCICHDLDHPGYNNIYQINART 797
            | ::|.:||..|...|||..:.:.....|.:...|||.:..:.:...||:||||.:|.:.||..:
 Frog   388 YHSDVAYHNNIHAADVAQSTHVLLSTPALEAVFTDLEIMAAIFASAIHDVDHPGVSNQFLINTNS 452

  Fly   798 ELALRYNDISPLENHHCSIAFRLLEHPECNIFKNFSRDTFNNIREGIIRCILATDMARHNEILTQ 862
            ||||.|||.|.|||||.::.|:||:...|:||:|.::.....:|:.:|..:|||||::|..:|..
 Frog   453 ELALMYNDASVLENHHLAVGFKLLQEENCDIFQNLTKKQRQTLRKMVIDMVLATDMSKHMNLLAD 517

  Fly   863 F-----------MEITPIFDYSNRAHINLLCMILIKVADISNEARPMDVAEPWLDRLLQEFFAQS 916
            .           :.:..:.:||:|..:   ...::..||:||..:|:::...|.||::.|||.|.
 Frog   518 LKTMVETKKVTSLGVLLLDNYSDRIQV---LQNMVHCADLSNPTKPLEIYRQWTDRIIVEFFHQG 579

  Fly   917 AAEKSEGLPVTPFMDPDKVSKPGSQVRFIGLVLLPLFEALGELV-PELTELIIIPVRIALEYYRR 980
            ..|:.:|:.::|..|....|...|||.||..::.||:|...:|| |:..|::             
 Frog   580 DREREKGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQEIL------------- 631

  Fly   981 LNDAQTKTRKSVADSNTSATSDSNSGTIDSN-----AAMVSTPGGASDKLSLDKGQGNSQGSGGG 1040
                                     .|::.|     :.:..:|....::...|:|          
 Frog   632 -------------------------DTLEDNREWYQSMIPQSPSPPPEEQDPDRG---------- 661

  Fly  1041 GGGGGGGGAGGGTGSGCGSNAAGSVSPQMPRSGSGISVKSRRSIPSQKSASRTSVDEPGGMASEL 1105
                               ||||.      :....::::......:::..:.:.:||... .|::
 Frog   662 -------------------NAAGD------KFQFELTLEEEGESDTEQEDTESPIDEENS-DSKI 700

  Fly  1106 HDLPEGSESGD-SETATEVD----VAEKTSKFKVDTEGSSNRSK--------------------- 1144
            |...:.:::.| :|.::.||    |:.|....::..:.:..:.|                     
 Frog   701 HATDDSAQASDEAEQSSPVDLCMTVSSKLDHLEIPPKSTLTKQKKILNFDNLKLAGERTIQQKEV 765

  Fly  1145 -SSHSTSRKSSREKRPSMIGELC 1166
             |||:|...|:|::.... .|:|
 Frog   766 SSSHATPANSARQEGTGQ-AEIC 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pde9NP_727644.3 PDEase_I 739..967 CDD:278654 80/239 (33%)
pde4cXP_004911040.1 PDEase_I 394..635 CDD:278654 81/281 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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