DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rnf128a and H10E21.5

DIOPT Version :9

Sequence 1:NP_997780.1 Gene:rnf128a / 322325 ZFINID:ZDB-GENE-030131-1044 Length:389 Species:Danio rerio
Sequence 2:NP_497129.1 Gene:H10E21.5 / 175169 WormBaseID:WBGene00019185 Length:473 Species:Caenorhabditis elegans


Alignment Length:411 Identity:111/411 - (27%)
Similarity:159/411 - (38%) Gaps:128/411 - (31%)


- Green bases have known domain annotations that are detailed below.


Zfish     9 VFSWLLLASVLQV-SSVRL----AEASYLCTAYLNISYTNPENNRSTWFQEEMGLYGQDSPKAYV 68
            :|...|.:||..| ::|:|    :|..| .|....::::|.:...||:.            .||.
 Worm    14 IFMRFLQSSVDAVYTNVKLQCIDSEEVY-GTLQTELTFSNKDGGGSTFL------------PAYT 65

Zfish    69 KGNVYLASPTYGCDDDTFYGRPNGSKGWIALIQRGNGC-----TFTEKINIAAMNGAAAAIIFND 128
            .    |.:|....||.                ||...|     ....::..|..|    .:|..|
 Worm    66 D----LCAPDMKFDDS----------------QRVFFCKNCIQNCLSRVETAPKN----ILIVAD 106

Zfish   129 FGSENRVIQMSHPGTTIVAIMIGNYRGMELVQLLDQGVPVAIAIEVGKQ---------HGP---- 180
            ..:.|..:...|..|                       ||:...|.|||         ..|    
 Worm   107 VKAPNNRVSWFHVQT-----------------------PVSNIRESGKQCNVENSNAMQSPEETS 148

Zfish   181 -----WMSHYSVFFVSISFFIVTAATVGYFIFYSARRLNSLRQQNRSQKKLKAEAKKAIGQLQVR 240
                 ..|..||.||||||.|:...::.:.:||..:|......::|.|::|...|:||:.::...
 Worm   149 TDALRSFSKTSVLFVSISFIILMVISLAWLVFYYVQRFRYAHAKDRLQRRLFNAARKALTRIPTM 213

Zfish   241 TLRQG-DQEIGPDADACAVCIDSYKAGDVLSILTCNHFFHKSCIEPWLLEHRTCPMCKCDILKAL 304
            |:..| .||:..|   ||||:|.|:..||:.:|.|.|.:|||||:|||||||||||||.||||..
 Worm   214 TITPGMTQELQSD---CAVCLDPYQLQDVIRLLPCKHIYHKSCIDPWLLEHRTCPMCKNDILKHF 275

Zfish   305 G-------------------------VELDVEEQPQISVPDFRPFSTSEDLHS-----ETASHTH 339
            |                         :||..:|....|.....|.:.|:...|     :.:.|.|
 Worm   276 GYWNDIRNDIQMPTNSRGIADDFTIRLELGEQEHQAPSADVISPEANSDTSDSQGFSFDNSEHHH 340

Zfish   340 SETASSGYASMHGNEHLAPPE 360
            ||  |.||    |.....||:
 Worm   341 SE--SFGY----GTSSTVPPQ 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf128aNP_997780.1 PA_GRAIL_like 38..172 CDD:239037 21/138 (15%)
zf-RING_2 256..297 CDD:290367 27/40 (68%)
H10E21.5NP_497129.1 HRD1 <150..325 CDD:227568 64/177 (36%)
RING-H2_GRAIL 226..273 CDD:319582 32/49 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22765
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.970

Return to query results.
Submit another query.