DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Agpat1 and Lpgat1

DIOPT Version :9

Sequence 1:NP_001259494.1 Gene:Agpat1 / 32230 FlyBaseID:FBgn0030421 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_001128301.1 Gene:Lpgat1 / 226856 MGIID:2446186 Length:409 Species:Mus musculus


Alignment Length:186 Identity:43/186 - (23%)
Similarity:86/186 - (46%) Gaps:44/186 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KFLMYYGIVSFNSIILIPAFL--------TRPCD------VRNLLW------ASTWCHRVSTLIG 78
            |.||.:..:..|:::.||:::        .|..|      :..|::      .::|.......: 
Mouse    56 KALMRFAFMVANNLVAIPSYICYVIILQPLRVLDSKRFWYIEGLMYKWLLGMVASWGWYAGYTV- 119

  Fly    79 LRWELRGKE--HLAKDQACIIVANHQSSLDVLGMFNIWHVMNKCTVVAKR-----ELFYAWPFGL 136
            :.|   |::  .:|||:|.::| |||::.||..:  :..:.:|..|||:.     .:|....||:
Mouse   120 MEW---GEDIKAIAKDEAVMLV-NHQATGDVCTL--MMCLQDKGPVVAQMMWLMDHIFKYTNFGI 178

  Fly   137 AAWLAGLIFIDRVRGEKARETLNDVNRRIK---KQRIKLWV--FPEG----TRRNT 183
            .:.:.|..||.:.|..:.::.| .:.:.::   :.|.:.|:  ||||    .||.|
Mouse   179 VSLIHGDFFIRQGRAYRDQQLL-VLKKHLEHNYRSRDRKWIVLFPEGGFLRKRRET 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Agpat1NP_001259494.1 LPLAT_AGPAT-like 70..254 CDD:153251 33/130 (25%)
Lpgat1NP_001128301.1 LPLAT_LCLAT1-like 108..324 CDD:153252 34/134 (25%)
Acyltransf_C 313..382 CDD:374349
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.