DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smr and SNT1

DIOPT Version :9

Sequence 1:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster
Sequence 2:NP_009962.2 Gene:SNT1 / 850399 SGDID:S000000629 Length:1226 Species:Saccharomyces cerevisiae


Alignment Length:1309 Identity:231/1309 - (17%)
Similarity:397/1309 - (30%) Gaps:440/1309 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 HYASQPN-SNPSQQQQQQH--QQQQGGNPSGAGATSGAGGGGGGSGGSVMV-----GSLGRILMP 496
            ||::.|| .:||....:..  :....|..|...|.:........|..||.:     ||...|..|
Yeast    17 HYSNNPNRRHPSAVYSKNSFPKSSNNGFVSSPTADNSTNPSVTPSTASVPLPTAAPGSTFGIEAP 81

  Fly   497 HPQALQYTSEYLTNATAAVAAAMVNQRQHLQLQQQQQ-QQHPPEPFG-----------GQQPYKK 549
            .|.....:|....::::..:...:..|.:..:::... ....||...           |...|.:
Yeast    82 RPSRYDPSSVSRPSSSSYSSTRKIGSRYNPDVERSSSTTSSTPESMNTSTITHTNTDIGNSRYSR 146

  Fly   550 QRLSEAN-----ANNMNHLPPHPQQQHQQQQQQQQQHQAHQQQHQRSSPAQVQQQQQQQMNSSRQ 609
            :.:|..|     :.|:.|.|                     .....:.|..|.....::..|...
Yeast   147 KTMSRYNPQSTSSTNVTHFP---------------------SALSNAPPFYVANGSSRRPRSMDD 190

  Fly   610 SHNDMCRQVVTTPMGMQLKVETLPQQQQKQQQHQQQQQQQQQQGRSQPVVSSMSTVVSQP----- 669
            ...|:..::.|..:          ........|....:..:.:....|         |:|     
Yeast   191 YSPDVTNKLETNNV----------SSVNNNSPHSYYSRSNKWRSIGTP---------SRPPFDNH 236

  Fly   670 VGTVTVT-----------------TAGLSASHSGSSGNV----------------AAGLGTGNTG 701
            ||.:|.|                 |..|.::||.||.::                :..:.|.:..
Yeast   237 VGNMTTTSNTNSIHQREPFWKANSTTILKSTHSQSSPSLHTKKFHDANKLDKPEASVKVETPSKD 301

  Fly   702 SASTEAYH-----PQVEAISPTLPSD--------------SSIEERGRTSAKE-----------D 736
            .....:||     |:.....|..|.:              ..:.:.||..|||           :
Yeast   302 ETKAISYHDNNFPPRKSVSKPNAPLEPDNIKVGEEDALGKKEVHKSGREIAKEHPTPVKMKEHDE 366

  Fly   737 LLMQIQKV--------DNEIKSAETTMETLRKKEKSLMEEAALAKEQRAAKEL------------ 781
            |..:.:||        .:||.:...|:.:..:..|...:|...:.|::.:.|:            
Yeast   367 LEARAKKVSKINIDGKQDEIWTTAKTVASAVEVSKESQKELTRSVERKESPEIRDYERAYDPKAL 431

  Fly   782 ----------NDNNNDQEPMVELS-------------W------RSQMLAEKIYAANRKTAQAQH 817
                      |||.:.:||:.::.             |      |:::::|:.|           
Yeast   432 KTDVTKLTVDNDNKSYEEPLEKVEGCIFPLPKAETRLWELKNQKRNKIISEQKY----------- 485

  Fly   818 SMLQNAAADESSPGSVAGRPWLPLYNQPLDVEALAMLIRQHQSQIRAPLLLHIRKLKAERWAHNQ 882
             :|:.|..:.|.         .|.|.|       ..||  ||......|...|.|:|.|......
Yeast   486 -LLKKAIRNFSE---------YPFYAQ-------NKLI--HQQATGLILTKIISKIKKEEHLKKI 531

  Fly   883 GLVEKYTKDQADWQRRCE----------RMEASAKRKAR---EAKNREFFEKVFTELRKQREDKE 934
            .|...|...|..:::.||          :.|...|||..   |.|.||  |.:.||  |::..:.
Yeast   532 NLKHDYFDLQKKYEKECEILTKLSENLRKEEIENKRKEHELMEQKRRE--EGIETE--KEKSLRH 592

  Fly   935 RFNRVGSRIKSEADLEEIMDGLQEQAL-----EDKKMRSYAVIPPLMHD-ARQRRCAYHNENGLI 993
            ..:...||.::.||.  :.|...|..|     ..|..::.|.||||:.| .|:....:.:.|.|:
Yeast   593 PSSSSSSRRRNRADF--VDDAEMENVLLQIDPNYKHYQAAATIPPLILDPIRKHSYKFCDVNNLV 655

  Fly   994 ED--MVAVHQQRKALNMWTAGEKETFKEKYLQHPKNFGAIAASL-DRKSPQDCVRYYYLSKKTEN 1055
            .|  :.|....:.|.:.:|..|...|.|.||.|||.||.|:..: ..:||::||.:||.:|||.|
Yeast   656 TDKKLWASRILKDASDNFTDHEHSLFLEGYLIHPKKFGKISHYMGGLRSPEECVLHYYRTKKTVN 720

  Fly  1056 YKQLL----RKSRQRTRSSRNPAKAQAAQPQCIIDSMTTGVMTRLQREQQQKSGGRSSA------ 1110
            |||||    :|.:....:.|...|.::...:..:|.........:::|::.::....:.      
Yeast   721 YKQLLIDKNKKRKMSAAAKRRKRKERSNDEEVEVDESKEESTNTIEKEEKSENNAEENVQPVLVQ 785

  Fly  1111 --------------------------VAERERAERAAERERVAEKAAADAAKAA----------- 1138
                                      ..|.|.|||..:.:|..::...::.|::           
Yeast   786 GSEVKGDPLGTPEKVENMIEQRGEEFAGELENAERVNDLKRAHDEVGEESNKSSVIETNNGVQIM 850

  Fly  1139 -------------------------------ESAAEKASAATKAVEATAAGEKVAKAAAAAAAAA 1172
                                           :||.|..::.....|:....|.:.:..:..:..:
Yeast   851 DPKGAVQNGYYPEETKELDFSLENALQRKKHKSAPEHKTSYWSVRESQLFPELLKEFGSQWSLIS 915

  Fly  1173 ATTATTATTTTSS----------------STSSSSSSASSASTASS--------------STASP 1207
            ....|.:||...:                .|.......||.|...|              |...|
Yeast   916 EKLGTKSTTMVRNYYQRNAARNGWKLLVDETDLKRDGTSSESVQQSQILIQPERPNINAYSNIPP 980

  Fly  1208 ---ATLAGIAADKTDAGKTASASDKNAATAGGPT-ATGTPTAATTPATATAPPEISAGGEAKSKN 1268
               ..|.......|....|:.:|...:....||. ...|.:..:.|.|...||.:.:....:|:.
Yeast   981 QQRPALGYFVGQPTHGHNTSISSIDGSIRPFGPDFHRDTFSKISAPLTTLPPPRLPSIQFPRSEM 1045

  Fly  1269 AEEEAAATAGAATVATAGTPATGASAASAGEATTATGATATAAAKGVGKPETATEPAGTAAKGAD 1333
            ||                                                .|.|:        ..
Yeast  1046 AE------------------------------------------------PTVTD--------LR 1054

  Fly  1334 SRP-DANDPLAKTASKAINAEGY----NAIG-GNSSSSSSNATGAS------------------- 1373
            :|| |..|.||..||...|.:.:    |||. |..|::.||....|                   
Yeast  1055 NRPLDHIDTLADAASSVTNNQNFSNERNAIDIGRKSTTISNLLNNSDRSMKSSFQSASRHEAQLE 1119

  Fly  1374 --APVQGVTLNGFKPGYQTVVMANVKA----STGGDDSGANAGGAAPGSLAATNASIATSGDKIV 1432
              ..:..:.:...||...|...:::.|    ..|...|..:.....|...|.:..: .|......
Yeast  1120 DTPSMNNIVVQEIKPNITTPRSSSISALLNPVNGNGQSNPDGRPLLPFQHAISQGT-PTFPLPAP 1183

  Fly  1433 KTTPSSRAP 1441
            :|:|.||||
Yeast  1184 RTSPISRAP 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmrNP_001259491.1 GPS2_interact 710..798 CDD:292412 24/161 (15%)
TPH <725..1006 CDD:290579 75/361 (21%)
SANT 1009..1048 CDD:238096 16/39 (41%)
SNT1NP_009962.2 PHA03255 62..>173 CDD:165513 18/131 (14%)
PRK03918 <348..>588 CDD:235175 56/273 (21%)
SANT 672..716 CDD:238096 18/43 (42%)
RPN2 <715..803 CDD:227446 14/87 (16%)
Myb_DNA-binding 892..933 CDD:395191 5/40 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1878
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7353
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001675
OrthoInspector 1 1.000 - - oto99485
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13992
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2297
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.980

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