DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smr and ncor2

DIOPT Version :9

Sequence 1:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster
Sequence 2:XP_012824535.2 Gene:ncor2 / 733898 XenbaseID:XB-GENE-5963150 Length:2467 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmrNP_001259491.1 GPS2_interact 710..798 CDD:292412
TPH <725..1006 CDD:290579
SANT 1009..1048 CDD:238096
ncor2XP_012824535.2 GPS2_interact 144..230 CDD:406267
SMC_N <160..911 CDD:308206
Myb_DNA-binding 608..651 CDD:395191
PHA03247 <964..1184 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 426 1.000 Inparanoid score I1716
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001675
OrthoInspector 1 1.000 - - oto103466
Panther 1 1.100 - - O PTHR13992
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.150

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