DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smr and snt1

DIOPT Version :9

Sequence 1:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster
Sequence 2:NP_594845.2 Gene:snt1 / 2541792 PomBaseID:SPAC22E12.19 Length:661 Species:Schizosaccharomyces pombe


Alignment Length:732 Identity:146/732 - (19%)
Similarity:256/732 - (34%) Gaps:189/732 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   784 NNNDQEPMVELSWRSQMLAEK---IYAANRKTAQAQHSMLQN--AAADESSPGSVAGRPWLPLYN 843
            ||.|.:....:: :|...:||   |...::.|...|...|||  |........:|....:..|..
pombe    36 NNEDSDTNTSIT-QSPTNSEKLTDILQESQDTKALQEKYLQNIYALTQNQLFKNVEDYSFYNLNR 99

  Fly   844 QPL--DVEALAMLIRQHQSQIRAPLLLHIRKLKAE------RWAHNQGLVEKYTKDQADWQRRCE 900
            :..  |.:.:..::|:.    |..|...|::|::.      ||..|...|::.|  :.|..:..:
pombe   100 EKFQRDKQTIVGVMRKR----RHVLNKKIKRLQSHWKQVLGRWEENIARVDRLT--EIDKTKNAK 158

  Fly   901 RMEASAKRKAREAKNREFFEKVFTELRKQREDKERFNRVGSRIKSEADLEEIMDGLQEQALEDKK 965
            :.|...||..|:..:.      ||              .|..::||.:..||:..|::|..|...
pombe   159 KSEPFIKRSTRKVMSN------FT--------------AGDIVRSEEEFLEILAKLEQQEKEASN 203

  Fly   966 MRS---YAVIPPLMHDARQRRCAYHNENG-LIEDMVAVHQQRKALNMWTAGEKETFKEKYLQHPK 1026
            :..   .|.|||::....:.:..|.|:.. |:.|....:..:...::|...:...|.::::.|.|
pombe   204 VSEASRIATIPPMILSEEEVKSQYFNDQSRLVTDCPKFYHFQSMPDIWNEEQHSIFVQQFILHGK 268

  Fly  1027 NFGAIAASLDRKSPQDCVRYYYLSKKTENYKQLL---RKSRQRTRSSRNPAKAQAAQPQCIIDSM 1088
            .||.||.::..|:.::||.:|||:|:|.:|:.|:   .|::.|.|....|:              
pombe   269 KFGKIAEAVPGKNSKECVLHYYLTKRTTDYRALVASATKTKGRRRKKLLPS-------------- 319

  Fly  1089 TTGVMTRLQREQQQKSGGRSSAVAERERAERAAERERVAEKAAADAAKAAES--------AAEKA 1145
                    ||..::||.| |:.:.:.|.|:.....|.: .....:|:..|::        :.|..
pombe   320 --------QRGGKKKSKG-SALMVDIEAADINKTEENI-NNQFQEASVTADNMNTWDNTPSVENV 374

  Fly  1146 SAATKAVEATAAGEKVAKAAAAAAAAAATTATTATTTTSSSTSSSSSSASSASTASSSTASPATL 1210
            .:|.:.|....|.|::                       .....|....:||.........|..:
pombe   375 ESANENVNNHNADEQM-----------------------DEKIKSLVEGNSAYEIEKGAQEPDPM 416

  Fly  1211 AGIAADKTDAGKTASASDKN------AATAGGPTA--------TGTPT--------AATTPATAT 1253
               :.|.||..:|.|....:      |...|..|.        ..|||        ..|......
pombe   417 ---SIDMTDKSETVSGFKHDVDVYDTAENEGNNTLLQIKESVHEKTPTQDEPMDISQDTIKQEDY 478

  Fly  1254 APPEISAGGEAK----SKNAEEEAAATAGAATVATAGTPATGASAASAGEAT---------TATG 1305
            ..|::.....:|    |...||:||:       |.|...|.|.|.::..|:.         ....
pombe   479 YEPKLEQHSSSKRNSISTRKEEDAAS-------ALANLSAVGRSISAVDESAHQGHLPGWDEKEE 536

  Fly  1306 ATATAAAKGVGKPETATEPAGTAAKGADSRPD-------------ANDPLAKTASKAINAEGYNA 1357
            |...:.|:|:...:....|. .|:.|...||.             |:|.:..:.||.:.....:|
pombe   537 ALIFSLAQGMNPMKMPLTPR-RASTGPRPRPTFQLTEIDSPNRRRASDCITPSISKILKMVSEDA 600

  Fly  1358 ----IGGNSSSSSSNATGASAPVQGVTLNGFKPGYQTVVMANVKASTGGDDSGANAGGAAPGSLA 1418
                |...|.....:.|.:|.....:  |.| |..|:...|::.                  :||
pombe   601 KSQRIDELSVEDQEHTTHSSHTTSDI--NAF-PNSQSFPRASIH------------------TLA 644

  Fly  1419 ATNASIA---TSGDKIV 1432
            |....|.   :..||||
pombe   645 ALGEDIVERQSKNDKIV 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmrNP_001259491.1 GPS2_interact 710..798 CDD:292412 3/13 (23%)
TPH <725..1006 CDD:290579 49/238 (21%)
SANT 1009..1048 CDD:238096 11/38 (29%)
snt1NP_594845.2 SANT 251..295 CDD:197842 15/43 (35%)
SANT 251..293 CDD:238096 14/41 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1878
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001675
OrthoInspector 1 1.000 - - oto101097
orthoMCL 1 0.900 - - OOG6_107553
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2297
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.830

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