DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smr and Ncor2

DIOPT Version :10

Sequence 1:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster
Sequence 2:XP_030110129.1 Gene:Ncor2 / 20602 MGIID:1337080 Length:2566 Species:Mus musculus


Alignment Length:3483 Identity:735/3483 - (21%)
Similarity:1087/3483 - (31%) Gaps:1336/3483 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   542 GGQQPYKKQ-RLSEANANNMNHLPPH----PQQ---QHQQQQQQQQQHQAHQQQH-QRSSPAQVQ 597
            |..||..:. |.:|.      ..|||    |.|   .|......:.||  |.:.: ...||..:.
Mouse     3 GSTQPVAQTWRAAEP------RYPPHGISYPVQIARSHTDVGLLEYQH--HPRDYTSHLSPGSII 59

  Fly   598 QQQQQQMNSSRQSHNDMCRQVVTTPMGMQLKVETLPQQQQKQQQHQQQQQQQ--QQQGR------ 654
            |.|:::.:                     |..|..|..::.|:.|.:.:.:.  .:.|:      
Mouse    60 QPQRRRPS---------------------LLSEFQPGSERSQELHLRPESRTFLPELGKPDIEFT 103

  Fly   655 --SQPVVSSMSTVVSQPVGTVTVTTAGLSASHSGSSGNVAAGLGTGNTGSASTEAYHPQVEAISP 717
              .:|.:..:...:.:|                  |..:|.|..:|:.......:...::|.:||
Mouse   104 ESKRPRLELLPDTLLRP------------------SPLLATGQPSGSEDLTKDRSLAGKLEPVSP 150

  Fly   718 TLP--SDSSIEERGRTSAKEDLLMQIQKVDNEIKSAETTMETLRKKEKSLMEEAALAKEQRAAKE 780
            ..|  :|..:|......:||:|:..:.:||.||...|..:..|:||::.|.|||  ||.....|.
Mouse   151 PSPPHADPELELAPSRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA--AKPPEPEKP 213

  Fly   781 LNDNNNDQEPMVELSWRSQMLAEKIYAANRKTAQAQHSMLQNAAADESSPGSVAGRPWLPLYNQP 845
            ::      .|.:|...||  |.:.||..|||.|:|.|.:|:.......          |||||||
Mouse   214 VS------PPPIESKHRS--LVQIIYDENRKKAEAAHRILEGLGPQVE----------LPLYNQP 260

  Fly   846 LDVEALAMLIRQHQSQIRAPLLLHIRKLKAERWAHNQGLVEKYTKDQADWQRRCERMEASAKRKA 910
            .|.......|:.:|: :|..|:|:.::....|....|...::|.:....|:::.||:|.:.:|:|
Mouse   261 SDTRQYHENIKINQA-MRKKLILYFKRRNHARKQWEQRFCQRYDQLMEAWEKKVERIENNPRRRA 324

  Fly   911 REAKNREFFEKVFTELRKQREDKERF-NRVGSR--------IKSEADLEEIMDGLQEQALEDKKM 966
            :|:|.||::||.|.|:|||||.:||. :|||.|        .:||.::.||:|||.||...:|:|
Mouse   325 KESKVREYYEKQFPEIRKQRELQERMQSRVGQRGSGLSMSAARSEHEVSEIIDGLSEQENLEKQM 389

  Fly   967 RSYAVIPPLMHDARQRRCAYHNENGLIEDMVAVHQQRKALNMWTAGEKETFKEKYLQHPKNFGAI 1031
            |..|||||:::||.|:|..:.|.|||::|.:.|::.|:..|||:..|::||:||::|||||||.|
Mouse   390 RQLAVIPPMLYDADQQRIKFINMNGLMDDPMKVYKDRQVTNMWSEQERDTFREKFMQHPKNFGLI 454

  Fly  1032 AASLDRKSPQDCVRYYYLSKKTENYKQLLRKSRQRTRSSRNPAKAQAAQPQCIIDSMTTGVMTRL 1096
            |:.|:||:..:||.||||:||.||||.|:|      ||.|...|:|..|.|              
Mouse   455 ASFLERKTVAECVLYYYLTKKNENYKSLVR------RSYRRRGKSQQQQQQ-------------- 499

  Fly  1097 QREQQQKSGGRSSAVAERERAERAAERERVAEKAAADAAK-----------AAESAAEKASAATK 1150
            |::|||:...|||. .|:|..|:..|.::..||..|:..|           :.|...||.:.|:|
Mouse   500 QQQQQQQQMARSSQ-EEKEEKEKEKEADKEEEKQDAENEKEELSKEKTDDTSGEDNDEKEAVASK 563

  Fly  1151 AVEATAAGEKVAKA-------AAAAAAAAATTATTATTTTSSSTSSSSSSASSASTASS-STASP 1207
                   |.|.|.:       ...:.|..|....|||...||..:|...:.||..|... .||..
Mouse   564 -------GRKTANSQGRRKGRITRSMANEANHEETATPQQSSELASMEMNESSRWTEEEMETAKK 621

  Fly  1208 ATL------AGIAADKTDAGKTASAS-----------------DKNAATAGGPTATGTPTAATTP 1249
            ..|      :.||  :....||.|..                 .::.....||   |....|:..
Mouse   622 GLLEHGRNWSAIA--RMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKMPGP---GLRHRASPA 681

  Fly  1250 ATATAPPEISAGGEAKSKNAEEEAAATAGAATVATAGTP--------ATGASA-----ASAGEAT 1301
            .|||..      .:.|.:||..:...|..||:..||..|        |:||||     |...||:
Mouse   682 VTATVL------SQEKERNARRKKKKTPAAASEETAFPPAAEDEEMEASGASANEEELAEEAEAS 740

  Fly  1302 TATG--------ATATAAAKGVGKPETATEPAGTAAKGADSRPDANDPLAKTASKAINAEGYNAI 1358
            .|:|        .:..||.......|:...|...|.|....:|        |.::|:.|      
Mouse   741 QASGNEVPRVGECSGPAAVNNSSDTESVPSPRSEATKDTGPKP--------TGTEALPA------ 791

  Fly  1359 GGNSSSSSSNATGASAPVQGVTLNGFKPGYQTVVMANVKASTGGDDSGANAGGAAPGSLAATNAS 1423
                        ....||         |..:...:|..:.|...|.||..:...:| |.||..|:
Mouse   792 ------------ATQPPV---------PPPEEPAVAPAEPSPVPDASGPPSPEPSP-SPAAPPAT 834

  Fly  1424 IATSGDKIVKTTPSSRAPNSTSSTAANESSSGAGVNTYGHTATTAGNYLGQKLKAAQVEGLGAGN 1488
            :    ||..:..|::.||.:..:                            |.:.::.|.:..|.
Mouse   835 V----DKDEQEAPAAPAPQTEDA----------------------------KEQKSEAEEIDVGK 867

  Fly  1489 ELHSDVSESKRKRFELNSGEAGGNATSAMTNSSTSGSMNISNSHGLKANAKDGSMMAKTSMASTS 1553
            ....:.||..                                ...:|::.|:.:.......|..:
Mouse   868 PEEPEASEEP--------------------------------PESVKSDHKEETEEEPEDKAKGT 900

  Fly  1554 SASVVVTSTPSASSSSLSSASSMLLISAASVMSTAAGATSSSTATTTATASAISLPLLADGSGNS 1618
            .|...|:..|    ..:..|.|    .||....:::|||..|.::.|.:|..:..|         
Mouse   901 EAIETVSEAP----LKVEEAGS----KAAVTKGSSSGATQDSDSSATCSADEVDEP--------- 948

  Fly  1619 MVNANEILALDGKDK--LASCFVCKAEACPRTRPLKKGRGQQYGIPDETIPAG-ARVCNSCQCKS 1680
                      :|.||  |.|         ||              |....||| .|...|     
Mouse   949 ----------EGGDKGRLLS---------PR--------------PSLLTPAGDPRASTS----- 975

  Fly  1681 VRSRYPNCPLPTCPNPKDRAQRLRNIPSRLFELAPEVRDPLMAEFQIPPHATRCCSACLMRIRRK 1745
                 |..||    :.|...||...||                    |...|:.           
Mouse   976 -----PQKPL----DLKQLKQRAAAIP--------------------PIQVTKV----------- 1000

  Fly  1746 LDPQLNLTDGSSGGAGSGSGGDETDVSTSSCDEREPGGSDTASVESPENLQRHKSLTMVKQQQQQ 1810
                                             .||...||.                       
Mouse  1001 ---------------------------------HEPPREDTV----------------------- 1009

  Fly  1811 QQQQQQQQQQQQQQQQQQLSQPQPPPPAP------------QQQKGSSGRGGDQGTPLIITPTRM 1863
                                .|:|.||.|            .||.|.|.||              
Mouse  1010 --------------------PPKPVPPVPPPTQHLQPEGDVSQQSGGSPRG-------------- 1040

  Fly  1864 SSKSGSGGAQTAGDNERLLPPAAGQAPKKQKTSEEYDS---------SATETADEENENSPANRQ 1919
            .|:|....|:...:.....|....:.||.......:.|         ...:|:....:.|..:..
Mouse  1041 KSRSPVPPAEKEAEKPAFFPAFPTEGPKLPTEPPRWSSGLPFPIPPREVIKTSPHAADPSAFSYT 1105

  Fly  1920 SPKVLFHGHGHGHGGHANNVAGL-QPPVANMG--TGGGVQPGGAAGQQVNGPISMRREAVNNVQD 1981
            .|     ||....|.|.:....| :||::|..  ......||                       
Mouse  1106 PP-----GHPLPLGLHDSARPVLPRPPISNPPPLISSAKHPG----------------------- 1142

  Fly  1982 CVFSVIERSLKHKGPQPKGGQGQQQGQGQGQGQGQGQTPGQSQSPSQQQQQQQQQQSANNLERKE 2046
                |:||.|         |...|||...           |.:.|..:..:...         ..
Mouse  1143 ----VLERQL---------GAISQQGMSV-----------QLRVPHSEHAKAPM---------GP 1174

  Fly  2047 LTIVREYRQDPGIL------KQQQQQQQAGGAPPTSAAGSLPHGTSVQKLTTRPAAVAPPPPAHP 2105
            ||:......||..|      ||:|...:....||.|........|||                  
Mouse  1175 LTMGLPLAVDPKKLAPFSGVKQEQLSPRGQAGPPESLGVPTAQETSV------------------ 1221

  Fly  2106 LTPTSTGCAGSNNGTSDSLATLSVVN-SHMGMVGIGHPGPMAHASSAGGIGVDKATITPVVKSSS 2169
            |..|:.|.|.|.:.|....:|.:... |:.|.:..|.|..:.:          |.||:.:|    
Mouse  1222 LRGTALGSATSGSITKGLPSTRAADGPSYRGSITHGTPADVLY----------KGTISRIV---- 1272

  Fly  2170 GSSKSGGGSASSHSTATPPETIIYNVPVAHPQRGIPPPSQHSVHPAHPSHTQHPAHPQHSSHGQH 2234
                  |..:.|.......:|:               |..|.::..                   
Mouse  1273 ------GEDSPSRLDRAREDTL---------------PKGHVIYEG------------------- 1297

  Fly  2235 TQLQVPEPEPQTLDLSIKKPPRDGHSPHTGAGGSSSSGSGSGGPSSSDRHHGPPPPTMSMKHIVR 2299
                                 :.||......|.|.|..|...|.|||    |||..|.:.|   |
Mouse  1298 ---------------------KKGHVLSYEGGMSVSQCSKEDGRSSS----GPPHETAAPK---R 1334

  Fly  2300 SGGMYR---GDTVTVPSL------AAPSSYLYPTRSVKTIGGGGVVPGVLPGVPGSAL-----YL 2350
            :..|..   |.|||..|:      |.|..:....:....|.|     .:..|:|.|.:     ||
Mouse  1335 TYDMMEGRVGRTVTSASIEGLMGRAIPEQHSPHLKEQHHIRG-----SITQGIPRSYVEAQEDYL 1394

  Fly  2351 QPVPVPVPISISGQGQLPPRAGQPPPAQPPSGRGVAKVPPKLSPQQAHHLHPSHG------HSPS 2409
            :           .:.:|..|.|.|||..||........|..|.|.....|.|:|.      ....
Mouse  1395 R-----------REAKLLKREGTPPPPPPPRDLTETYKPRPLDPLGPLKLKPTHEGVVATVKEAG 1448

  Fly  2410 QQQQQQQQQQQQQQQQAAAAQQQLLVKSGSITHGTPANSAQQQIIVHAPAT------------AA 2462
            :...:..:::.::..:...|.:.|  |.||||.|||.....     .||:|            :.
Mouse  1449 RSIHEIPREELRRTPELPLAPRPL--KEGSITQGTPLKYDS-----GAPSTGTKKHDVRSIIGSP 1506

  Fly  2463 AAPSSLLSPKFD------GLVRQTTPEGVGSVGPGGASGSGKHGSITQGTPLHMP----PHHLES 2517
            ..|...|.| .|      .|.|....|.:.| ..|.:||:|  ||||:|.|:.:|    |.  :|
Mouse  1507 GRPFPALHP-LDIMADARALERACYEESLKS-RSGTSSGAG--GSITRGAPVVVPELGKPR--QS 1565

  Fly  2518 KRPYESYYKSSQRHSPAQQPGGNQQLPPPPQQSSPQAPPPQGYGVGVSSP--YARSPFAGVVE-Q 2579
            ...||.:......|.|...|...::..|..|:.|..:..........|:|  .|:||.:.|.| .
Mouse  1566 PLTYEDHGAPFTSHLPRGSPVTTREPTPRLQEGSLLSSKASQDRKLTSTPREIAKSPHSTVPEHH 1630

  Fly  2580 PQVLSTRQIVMHDYITSQQMQGQQQQQQQQQQQQRNMSRGSSASGGGGGGGSDKESPSPRNSVGS 2644
            |..:|..:                           ::.||.:        |.|            
Mouse  1631 PHPISPYE---------------------------HLLRGVT--------GVD------------ 1648

  Fly  2645 ASGFAYGG------DKESAPRGRPEYSSRAS---PADHVNSTPS-PHRTPP------------PQ 2687
                .|.|      |..|.|||.|..::.|:   |. |:..:|: ||..||            ..
Mouse  1649 ----LYRGHIPLAFDPTSIPRGIPLEAAAAAYYLPR-HLAPSPTYPHLYPPYLIRGYPDTAALEN 1708

  Fly  2688 RQGVI--------QRHNTGSKPPSPA------APPPSRMHMPPYQYAPSGHDALASFVDVAVQQP 2738
            ||.:|        ..||..|.....|      :|..|.:.: .|...|.|      .:|:: |.|
Mouse  1709 RQTIINDYITSQQMHHNAASAMAQRADMLRGLSPRESSLAL-NYAAGPRG------IIDLS-QVP 1765

  Fly  2739 QLP--VPSQKDDKSPG-PSTAPGQ---VPGSGPPL----GPSPLPPHAVVGVAQPPPPTAHHDQR 2793
            .||  ||     .:|| |:||..:   :|.:.||.    ..|||.|.....:|:|...::     
Mouse  1766 HLPVLVP-----PTPGTPATAIDRLAYLPTAPPPFSSRHSSSPLSPGGPTHLAKPTATSS----- 1820

  Fly  2794 YRDLTLHHHHHTLVQQQIAQQQHYRSLNVAAQVDMQRQMDQAKRVMRHQQHQVQQQQQQQQQQQH 2858
                                                                             
Mouse  1821 ----------------------------------------------------------------- 1820

  Fly  2859 NHALERDREMQERMRERDREREREREREQRERERERERERERE--------------RERREQDR 2909
                                         .||||||||||::.              |...||  
Mouse  1821 -----------------------------SERERERERERDKSILTSTTTVEHAPIWRPGTEQ-- 1854

  Fly  2910 ARRVVAEEREHDSRRMERMFAGNVVTGSGGAGGGGPSPGQFLRASVPETGPPRSIPDRERESYYR 2974
                                       |.||||.. .|........|.:...:....:.....:.
Mouse  1855 ---------------------------SSGAGGSS-RPASHTHQHSPISPRTQDALQQRPSVLHN 1891

  Fly  2975 QAHGGPAPEDTPGQLSAQSLIDAIIKHEINRSNDATAGPGREFPRPSFVHAPLPPRGSGSGGGTG 3039
            .:..|......||       ...:::...:.|..:...|...|| |: .|.||        |||.
Mouse  1892 TSMKGVVTSVEPG-------TPTVLRWARSTSTSSPVRPAATFP-PA-THCPL--------GGTL 1939

  Fly  3040 TRSSPANVLHPMYL--------RDLRQPLDGGAGSMLTAENNGKPSSSGSPSVINIDLDQERI-- 3094
            ....| .::.|:.|        |..|..:|.| .:.||.....:|:||.|.|      .:.|.  
Mouse  1940 EGVYP-TLMEPVLLPKETSRVARPERPRVDAG-HAFLTKPPAREPASSPSKS------SEPRSLA 1996

  Fly  3095 --SAAAAAVAQQQQQQQAP------PPSQSSQS-------------------RSVHGQLRTPTS- 3131
              |::..|:|:...:..||      ||:.:|.|                   ||:.....|..: 
Mouse  1997 PPSSSHTAIARTPAKNLAPHHASPDPPAPTSASDLHREKTQSKPFSIQELELRSLGKTTLTAATF 2061

  Fly  3132 ---------------QAGGS--------------------------APSPQQIHTKSIT------ 3149
                           :.|||                          ..||...|.|.::      
Mouse  2062 IDAIITRQIAHERGPREGGSLANDSPGDGYHSGAGYSPDGVEPISPVSSPSLTHDKGLSKPLEEL 2126

  Fly  3150 -----FGELTDS-----IITSDYGTNPHLRPPYMAYLQETQSILPPDRWKQNRRMQQKAEEAKHH 3204
                 .|||...     .::::....|||||     |.|:|....|        :.|.|...|.|
Mouse  2127 EKSHLEGELRHKQPGPMKLSAEAAHLPHLRP-----LPESQPSSSP--------LLQTAPGIKGH 2178

  Fly  3205 SQQQQQQQHQQQHHAQQQQQQQQQHHAQQHHPQMPGTGSGSAPGGAGQGGGSGGPGSGGGGAGRA 3269
                |:.....||.::...|...:||.||....:|.. ..|.||                    |
Mouse  2179 ----QRVVTLAQHISEVITQDYTRHHPQQLSGPLPAP-LYSFPG--------------------A 2218

  Fly  3270 STPGEDGRNIIRMPQAVSPRKFNHEMMLHHVMGTTGAGGEAGQFFLPSRVVLPEQRGTPSGGGGA 3334
            |.|..|    :|.|.:                          ..:||     |...|||:     
Mouse  2219 SCPVLD----LRRPPS--------------------------DLYLP-----PPDHGTPA----- 2243

  Fly  3335 PGAGGPGSGGGATTIEKYVKTRIAEVMRDDIGYGKNRTVEVRTEDEVTADMVAHSHAAVHAAHVA 3399
              .|.|.|.||..:.|. .||.:       :|         .:||.:  :.|:.........|  
Mouse  2244 --RGSPHSEGGKRSPEP-SKTSV-------LG---------SSEDAI--EPVSPPEGMTEPGH-- 2285

  Fly  3400 HAAHVAHAAAMELQHRSKEPPPPEISVSRKTPNQYEVVDASGRRSAGSGSVSV-----SVSGANS 3459
                 |.:.|..|.:|..|...|.  :..|:|.......|...:...|.|..|     .::...:
Mouse  2286 -----ARSTAYPLLYRDGEQGEPR--MGSKSPGNTSQPPAFFSKLTESNSAMVKSKKQEINKKLN 2343

  Fly  3460 HHSPYHPPAAAYAPSTYAFPYSALNVPGAAG-------------------GL------------- 3492
            .|:...|......|.|..|     |:|...|                   ||             
Mouse  2344 THNRNEPEYNIGQPGTEIF-----NMPAITGAGLMTCRSQAVQEHASTNMGLEAIIRKALMGKYD 2403

  Fly  3493 -----PP-----HQPLQLAHQ--AVAPPGAFAKAKAAHALSELGAVGGGVSLVVGGGSG------ 3539
                 ||     ..||..:..  |.|.|...|..::.|||:..|  |||.:.|.|..|.      
Mouse  2404 QWEEPPPLGANAFNPLNASASLPAAAMPITTADGRSDHALTSPG--GGGKAKVSGRPSSRKAKSP 2466

  Fly  3540 --GIAGG--PGGVSVGVGVPGGGG---------------PGSGGGGGGGHNSSSSQASAAVAAA- 3584
              |:|.|  |..||   .|...|.               |.|.|.....:|....:..|.|.|: 
Mouse  2467 APGLASGDRPPSVS---SVHSEGDCNRRTPLTNRVWEDRPSSAGSTPFPYNPLIMRLQAGVMASP 2528

  Fly  3585 ----VAAAA-----------SESKPLLLSKYDALSDED 3607
                :||.:           .|.||||.|:|:.|||.:
Mouse  2529 PPPGLAAGSGPLAGPHHAWDEEPKPLLCSQYETLSDSE 2566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmrNP_001259491.1 GPS2_interact 708..>776 CDD:464868 23/69 (33%)
TPH <725..1020 CDD:464007 108/303 (36%)
Myb_DNA-binding 1009..1048 CDD:459731 21/38 (55%)
Atrophin-1 <2187..>2323 CDD:460830 27/144 (19%)
Ncor2XP_030110129.1 GPS2_interact 143..229 CDD:464868 29/95 (31%)
SMC_prok_B <161..>411 CDD:274008 95/270 (35%)
SANT 432..475 CDD:473887 24/42 (57%)
RSC8 <535..>645 CDD:227584 28/118 (24%)
Myb_DNA-binding 610..653 CDD:459731 9/44 (20%)
PHA03247 <966..1211 CDD:223021 70/440 (16%)
PHA03247 <1771..2028 CDD:223021 72/415 (17%)

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