DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smr and gei-8

DIOPT Version :9

Sequence 1:NP_001259491.1 Gene:Smr / 32225 FlyBaseID:FBgn0265523 Length:3607 Species:Drosophila melanogaster
Sequence 2:NP_498773.3 Gene:gei-8 / 176145 WormBaseID:WBGene00001565 Length:1778 Species:Caenorhabditis elegans


Alignment Length:2486 Identity:437/2486 - (17%)
Similarity:709/2486 - (28%) Gaps:1000/2486 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   886 EKYTKDQADWQRRCERMEASAKRKAREAKNREFFEKVFTELRKQREDKERFNRVGSRIKSEADLE 950
            ||:...|.|.|    :.|.:::||.....:|...|..|.||:::|||:||:.| ..||:.|.:..
 Worm    13 EKFKAFQDDLQ----KWEETSERKEYAEFHRVQAESEFPELKREREDRERWAR-AERIRGEDEKS 72

  Fly   951 EIMDGLQEQALEDKKMR-SYAVIPPLMHDARQRRCAYHNENG-LIEDMVAVHQQR--KALNMWTA 1011
            .:   .:|.|  |||:| ..|.||.|:.::.::...:....| :::||...|:|.  ..|..|:.
 Worm    73 ML---AKEHA--DKKIRLGVAKIPRLLTESERKMDEFVERPGSILKDMKKEHRQSVLDRLEEWSP 132

  Fly  1012 GEKETFKEKYLQHPKNFGAIAASLDRKSPQDCVRYYYLSKKTENYKQLLRKSRQRTR-------S 1069
            .|:..||.:...|.|.|..:......|:..|.|.:||::||||:||:..:..::.|:       |
 Worm   133 EERSLFKSRQADHVKIFHGLTEFFVDKTASDLVLFYYMNKKTEDYKKDFKPKKRVTKYKVGAFPS 197

  Fly  1070 SRNPAKAQAAQP-----------QCIIDSMTTGVM----TRLQREQQQ------------KSGGR 1107
            ....|..:...|           .|.....|...:    |.:.:|..:            .||.|
 Worm   198 VEELAYFRMMPPLDFSSFPKNSLMCYFCCRTVNGIDLNGTFMPKEAYEIFAICPDEDRVVCSGCR 262

  Fly  1108 SSAVA--------------ERERAER-------------AAERERVAEKAAADAAKAAESAAEKA 1145
            ..|..              :::||.|             ...|..:.:|..:... |.:......
 Worm   263 EEAAKLYKDNRCFGNRCSNQKKRANRVNRNIPLDFADFPVRTRAFIMDKLGSTRV-AVKFCTPCK 326

  Fly  1146 SAATKAVEATAAGEKVAKAA----AAAAAAAATTATTATTTTSSSTSSSSSSASSASTASSSTAS 1206
            :|.|:.:......|:...|.    ...........|...|..:||.:....|.|.......:...
 Worm   327 NALTRWINDVNNKEETIMAELLNYEGQVGWTDDEKTKLVTLINSSPTLDWVSISEGMNRRPNECK 391

  Fly  1207 PATLAGIAADKTDAGKT------ASASDKNAATAGGPTATGTPTAATTPATATAPPEISAGGEAK 1265
                  :..|..:..||      ....|.|....||.....|||.::..|..:          ..
 Worm   392 ------MQYDAMNGVKTQPMIEEVDEEDGNGQEEGGDALVNTPTTSSAAARRS----------GL 440

  Fly  1266 SKNAEEEAAATAGAATVATAGTPATGASAASAGEATTATGATATAAAKGVGKP------------ 1318
            ::||::         .|.|...|.:.....:.|         |...|:.|.||            
 Worm   441 ARNAKK---------PVRTPRAPRSAGGRRTGG---------AVTRAQAVPKPVEDLGEEIDEME 487

  Fly  1319 -ETATEPAGTAAKGADSRPDANDPLAKTASKAINAEGYNAIGGNSSSSSSN-------------- 1368
             |...|.|...::|.||:.    |..:..|.| :.||.:..|.:..:....              
 Worm   488 IEDNDEDASRGSRGKDSKA----PSDRDGSPA-DMEGDSPEGQDQDADQDQDQDQDVDEEEEEVI 547

  Fly  1369 ATGASAPVQ-----GVTLNGFKPGYQTVVMANVKASTGGDDSGANAGGAAPGSLAATNASIATSG 1428
            .....:||:     .:...|.||.:..|                                     
 Worm   548 VRDIDSPVKTLLSPKILSGGHKPDFPPV------------------------------------- 575

  Fly  1429 DKIVKTTPSSR-APNSTSSTAANESSSGAGVNTYGHTATTAGNYLGQKLKAAQVEGLGAGNELHS 1492
            .:|.|.:.||: .|.....|..|||..|...|                            :.|..
 Worm   576 PRIQKPSTSSQPPPPEPMDTKENESDDGEEDN----------------------------DILEI 612

  Fly  1493 DVSESKRKRFELNSGEAGGNATSAMTNSSTSGSMNISNSHGLKANAKDGSMMAKTSMASTSSASV 1557
            ||.|...||....|     :::..:.:||..||.......||....:.....|:      |:|..
 Worm   613 DVDEPPAKRPTPTS-----SSSHLIGSSSVGGSERELGGRGLVQQQQQQQPQAQ------SAAPP 666

  Fly  1558 VVTSTPSASSSSLSSASSMLLISAASVMSTAAG------ATSSSTATTTATASAISLPLLADGSG 1616
            |..||.:|       |::..|::|.|...:.|.      .||:|....|....||..|       
 Worm   667 VTVSTAAA-------ATAERLVNATSPSPSVASQHLVPTETSTSVPPVTIVPPAIQQP------- 717

  Fly  1617 NSMVNANEILALDGKDKLASCFVCKAEACPRTRPLKKGRGQQYGIPDETIPAGARVCNSCQCKSV 1681
                    ::.:.|             |.|:..       ||     :|..:.|.:..       
 Worm   718 --------VVVISG-------------AAPQFT-------QQ-----QTTHSPALIAQ------- 742

  Fly  1682 RSRYPNCPLPTCPNPKDRAQRLRNIPSRLFELAPEVRDPLMAEFQIPPHATRCCSACLMRIRRKL 1746
                   |:|         |:|  ||.|       |..|...   :.|...|             
 Worm   743 -------PIP---------QQL--IPQR-------VSTPAQI---LTPTPVR------------- 766

  Fly  1747 DPQLNLTDGSSGGAGSGSGGDETDVSTSSCDEREPGGSDTASVESPENLQRHKSLTMVKQQQQQQ 1811
                                 .|..||.|.|:                     .|.:.|||||||
 Worm   767 ---------------------PTAASTPSMDQ---------------------FLGLFKQQQQQQ 789

  Fly  1812 QQQQQQQ------------------QQQQQQQQQQLSQPQPPPPAPQQQKGSSGRGGDQGTPLII 1858
            |||.||.                  ||||||||.|.:|.|     ..|.:||.    ..|||.  
 Worm   790 QQQPQQSNLMQQLGNINPQFLALLLQQQQQQQQVQQAQVQ-----AAQTQGSL----TSGTPF-- 843

  Fly  1859 TPTRMSSKSGSGGAQTAGDNERLLPPAAGQAPKKQKTSEEYDSSATETADEENENSPANRQSPKV 1923
                        .||...|          :|.:|..:|.|...:......:..:...|.:|:|.:
 Worm   844 ------------QAQQRPD----------EALQKLFSSPEMLGTLLNAKYQFPQFPQAIQQNPLL 886

  Fly  1924 LFHGHGHGHGGHANNVAGLQPPVANMGTGGGVQPGGAAGQQVNGPISMRREAVNNVQDCVFSVIE 1988
            :          :|.:...||.                  ||:         |:.:.|        
 Worm   887 M----------NAQHQLILQQ------------------QQL---------AMQHAQ-------- 906

  Fly  1989 RSLKHKGPQPKGGQGQQQGQGQGQGQGQGQ---TPGQSQSPSQQQQQQQQQQSANNLERKELTIV 2050
                .:..|....|..|..|.|.|.|.:.:   ...|:::.:..|.:.|.||.|:          
 Worm   907 ----AQAAQAAQAQAAQAAQAQAQAQAEAKLKTQAAQAKAQADAQARVQTQQQAH---------- 957

  Fly  2051 REYRQDPGILKQQQQQQQAGGAP---PTSAAGSLPHGTSV----QKLTTRPAAVAPPPPAH-PLT 2107
                     ||.|.|.|.....|   |.|.  .:|.|.:.    :.||....:.:..|||| |..
 Worm   958 ---------LKAQAQAQYQMNRPQLIPASV--QMPIGINTAYHQKSLTPSETSASATPPAHRPRA 1011

  Fly  2108 PTSTGC---AGSNNGTSDSLATLSVVNSHMGMVGIGHPGPMAHASSAGGIGVDKATITPVVKSSS 2169
            .|:.|.   ||.:|.....|.||.                                         
 Worm  1012 ATTVGSKMPAGRSNVQEAELRTLK----------------------------------------- 1035

  Fly  2170 GSSKSGGGSASSHSTATPPETIIYNVPV--------AHPQRGIPPPSQHSVHPAHPSHTQHPAHP 2226
                               |.:|..:.:        ||.:|     .:.::       ..:.|..
 Worm  1036 -------------------EELIKRIRLFRDRIAEDAHLKR-----EEENI-------VTYTAQI 1069

  Fly  2227 QHSSHGQHTQL--QVPEPEPQTLDLSIKKPPRDGHSPHTGAGGSSSSGSGSGGPSSSDRHHGPPP 2289
            |.|....:|::  |:.:...|.....|:                                     
 Worm  1070 QASRVQYNTEILGQMKQRYEQAAARRIE------------------------------------- 1097

  Fly  2290 PTMSMKHIVRSGGMYRGDTVTVPSLAAPSSYLYPTRSVKTIGGGGVVPGVLPGVPGSALYLQPVP 2354
                                .|..|..|:.:               :.||.......:::     
 Worm  1098 --------------------IVKELDEPAKF---------------INGVQNKFNDFSVF----- 1122

  Fly  2355 VPVPISISGQGQLPPRAGQPPPAQPPSGRGVAKVPPKLSPQQAHHLHPSHGHSPSQQQQQQQQQQ 2419
                                                ||.......||.......::|:..|.|||
 Worm  1123 ------------------------------------KLDEIDRQTLHEILQRYAAEQKPDQLQQQ 1151

  Fly  2420 QQQQQQAAAAQQQLLVKSGSITHGTPANSAQQQIIVHAPATAAAAPSSLLSPKFDGLVRQTTPEG 2484
            |..                                                  |..|:||     
 Worm  1152 QND--------------------------------------------------FHNLLRQ----- 1161

  Fly  2485 VGSVGPGGASGSGKHGSITQGTPLHMPPHH---LESKRPYESYYKSSQRHSPAQQPGGNQQLPPP 2546
             .::|...|          |...|...||.   ::.::..|::.|..|:|..||:    ::|..|
 Worm  1162 -NNIGIRQA----------QYPALQASPHQAAIIQHQQQQEAFKKLQQQHQDAQK----RKLEAP 1211

  Fly  2547 PQQSSPQAPPPQGYGVGVSSP---YARSPFA------GVVEQPQVLSTRQIVMHDYITSQQMQGQ 2602
            ...::||.   :...:..|||   :::.|..      .||.|.::...|:.::.:...:|.:...
 Worm  1212 VSSATPQV---KRIALSQSSPVQRFSQHPNGTLPHNLAVVYQNKMPQDREKLLQEQQLNQYLFAA 1273

  Fly  2603 QQQQQQQQQQQRNMSRGSSASGGGGGGGSDKESPSPRNSVGSASGFAYGGDKESAPRGRPE---- 2663
            |||..|||||..               |:..|..|.|.|         |.:..::.:|.|.    
 Worm  1274 QQQHLQQQQQHH---------------GTQPEQKSKRKS---------GIESITSMQGAPHRHIQ 1314

  Fly  2664 ----YSSRASPADHVNSTPSPHRTPPPQRQGVIQRHNTGSKPPSPAAPPPSRMHMPPYQYAPSGH 2724
                .|||......|:...|..|:..|...|...|..|.                     ..|||
 Worm  1315 LAGPSSSRIQSGRGVSPALSASRSVAPTISGAAGRSITA---------------------GTSGH 1358

  Fly  2725 DALASFVDVAVQQ---------PQL--------------PVPSQKDDK----SPGPSTAPGQVPG 2762
            .:.:.:.....::         |||              |..:...|:    ..||...|..:..
 Worm  1359 SSTSDYNKELAERMNEVFKPTHPQLLQTKASAMNSNAVSPANTNNSDEIECVYQGPPKTPASIKR 1423

  Fly  2763 SGPPLGPSPLPPHAVVGVAQPP--------PPTAHHDQRYRDLTLHHHHHT-------LVQQQIA 2812
            ..|..||..|....:..:...|        ||....|:....|::..:...       :|.:.|:
 Worm  1424 LQPTEGPRTLSGQRMKSILSVPAHQRRSSIPPVKTEDEAMECLSMMMYEEAKAPPSDRIVTKLIS 1488

  Fly  2813 QQQHYRSLNVAAQVD--------MQRQMDQAKRVM---------RHQQHQVQQQQQQQQQQQHNH 2860
            ..:...:.|.:|:..        ::|..::.:|::         |.....:||.||..||..:..
 Worm  1489 SSEAAAAANPSAKFSYLDIFNDVVKRDEERCQRMLQSTSVLQPSRELDAFLQQLQQNPQQYANLS 1553

  Fly  2861 ALERDREMQERMRERDREREREREREQRERERERERERERERER----REQDRARRVVAEEREHD 2921
            |.|:....|.::....::.:::.:.:..::.:::::.|....|:    |......|.:.....| 
 Worm  1554 AAEKLALQQYQIHSAHQKSQQQAQLQAAQQLQQQQQARPDHYEKFHLLRPNAEIVRPIPTTFSH- 1617

  Fly  2922 SRRMERMFAGNVVTGSGGAGGGGPSPGQFLRASVPETGPPRSIPDRERESYYRQAHGGPAPEDTP 2986
                   |.....|.:..:....|   |||:       ||.:           .:...|.|..||
 Worm  1618 -------FLNKATTSTVSSSASAP---QFLQ-------PPAA-----------ASIAAPTPISTP 1654

  Fly  2987 GQLSAQSLIDAIIKHEINRSNDATAGPGREFPRPSFVHAPLPPRGSGSGGGTGTRSS-------- 3043
            ..:.:.|:                 |.....|.|..||.|:.|...|......:..|        
 Worm  1655 HAMPSPSV-----------------GVQTAPPTPQAVHHPVMPIIPGKPSSVNSNVSDVSSDDDD 1702

  Fly  3044 -------PANVLHPM--------YLRDLR--------------QPLDGGAGSMLTAENNGKPSSS 3079
                   |||.|.|:        .:.|||              .||      ::.|:|..:|...
 Worm  1703 VRNPEKLPANRLPPLPGDKTAFRSVIDLRATGHVAVTKKIPVKYPL------VVQAQNGIQPIKD 1761

  Fly  3080 GSPSVINI---DLDQE 3092
            ..|...|:   ||..:
 Worm  1762 YGPPCKNLVYEDLSDD 1777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmrNP_001259491.1 GPS2_interact 710..798 CDD:292412
TPH <725..1006 CDD:290579 37/123 (30%)
SANT 1009..1048 CDD:238096 10/38 (26%)
gei-8NP_498773.3 SANT 356..394 CDD:238096 6/43 (14%)
SANT 356..394 CDD:197842 6/43 (14%)
KAAG1 1308..1371 CDD:259486 14/83 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001675
OrthoInspector 1 1.000 - - oto20041
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2297
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.030

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