DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tis11 and AT3G06410

DIOPT Version :9

Sequence 1:NP_001259490.1 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_187292.2 Gene:AT3G06410 / 819815 AraportID:AT3G06410 Length:462 Species:Arabidopsis thaliana


Alignment Length:316 Identity:64/316 - (20%)
Similarity:90/316 - (28%) Gaps:117/316 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GLTRTISQPAQLIQQQQQQHQQQQQQQPAVASLVTITENLGNMNLHRK------LER-------- 119
            |||...:.|..|..|...|..||||.||. ..|.||...|.:.::...      |.|        
plant   166 GLTCRFNHPVPLAVQGPPQQPQQQQPQPQ-PQLQTIYPTLQSQSIPSSQQYGLVLTRPSFLTGSY 229

  Fly   120 -----------------------------------TQSE----------PLPPQQPMNTSRYKT- 138
                                               ||..          ||.|.....|..|:: 
plant   230 LQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSV 294

  Fly   139 ----------------ELCRPFEEAGECKYGEKCQFAHGSHE--------LRNVHRHPKYKTEYC 179
                            ..|:.|...|:||:|..|::.|....        |.::....:.....|
plant   295 PSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQC 359

  Fly   180 RTFHSVGFCPYGPRCHFVHNADEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNS 244
            ..|...|.|.:||.|.|.|:                        .|||.::||.::..::.....
plant   360 THFAQHGICKFGPACKFDHS------------------------MSSSLSYSPSASSLTDMPVAP 400

  Fly   245 SSSSSSSGGGGGGGNSINNNNGSQFYLP--------LSPPLSMSTGSDRESPTGSL 292
            ....|||..|.....|.:|....:...|        ||.|....|..|..|.:||:
plant   401 YPIGSSSLSGSSAPVSSSNEPTKEAVTPAVSSMVSGLSRPEPAETSGDSASVSGSI 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_001259490.1 zf-CCCH 136..161 CDD:279036 8/41 (20%)
zf-CCCH 174..198 CDD:279036 8/23 (35%)
AT3G06410NP_187292.2 zf-CCCH 55..81 CDD:279036
zf-CCCH 102..127 CDD:279036
zf-CCCH 149..175 CDD:279036 3/8 (38%)
zf-CCCH 308..334 CDD:279036 8/25 (32%)
zf-CCCH 354..378 CDD:279036 8/23 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5063
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

Return to query results.
Submit another query.