DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tis11 and AT2G28450

DIOPT Version :10

Sequence 1:NP_511141.2 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_180412.2 Gene:AT2G28450 / 817393 AraportID:AT2G28450 Length:809 Species:Arabidopsis thaliana


Alignment Length:162 Identity:33/162 - (20%)
Similarity:59/162 - (36%) Gaps:46/162 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TENLGNMNLHRKL----ERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
            |:|:..:...||.    |:|..|....:....:..:||.||..|.....|.:|.:|::|||..||
plant    45 TDNIEAVGEKRKRADEDEKTNLESSDTKITTPSPWWKTSLCSYFRREASCSHGNECKYAHGEAEL 109

  Fly   166 RNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNADEARAQQAAQAAKSSTQSQSQSQQSSSQNF 230
            |       .|.:.          .:.|            ..:..:.||:...|:.:.::.....|
plant   110 R-------MKPDN----------TWDP------------TSERGKKAKAMKMSEHEEKEEDEVLF 145

  Fly   231 SPKSNQSSNQSSNSSSSSSSSGGGGGGGNSIN 262
            :.:..:|.:             |..|||.|::
plant   146 TEQMMESID-------------GDEGGGGSVS 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_511141.2 CTH1 <121..>198 CDD:227395 17/76 (22%)
AT2G28450NP_180412.2 zf-CCCH 80..106 CDD:459885 10/25 (40%)
RRM_AtRDRP1_like 172..236 CDD:410191
TrmA <264..808 CDD:441866
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.