DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tis11 and zfp36l2l

DIOPT Version :10

Sequence 1:NP_511141.2 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:XP_012816595.1 Gene:zfp36l2l / 549576 XenbaseID:XB-GENE-5835930 Length:281 Species:Xenopus tropicalis


Alignment Length:199 Identity:68/199 - (34%)
Similarity:93/199 - (46%) Gaps:26/199 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 PPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPY 190
            |....:::.|||||||..:.|:|.|.|..:||||||..|||...:|||||||.||:||.:|.|.|
 Frog    46 PKHSSLSSLRYKTELCTRYAESGFCAYRNRCQFAHGLSELRPPVQHPKYKTELCRSFHVLGTCNY 110

  Fly   191 GPRCHFVHNADEARAQQAAQAA------KSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNSSSSSS 249
            |.||.|:|:..|.|....:..|      |.:...:.:.:...|....|...:...|...||....
 Frog   111 GLRCLFIHSPQERRESPVSPDAPRLPTRKYAGPYRERCRLWRSPGGCPYGARCHFQHPKSSREVC 175

  Fly   250 SSGGGGGGGNSINNNNGSQFYLPLSPPLSM-------STGS------DRESPTGS--LSLSPTNS 299
            ......|     :...|::.:...||||..       |:||      |.:|..|:  ||.||.|:
 Frog   176 RHFAALG-----DCPYGARCHFSHSPPLDRWGSGTKNSSGSLSPSDPDPDSDPGTPVLSESPANN 235

  Fly   300 LTSF 303
            ..||
 Frog   236 AFSF 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_511141.2 CTH1 <121..>198 CDD:227395 39/71 (55%)
zfp36l2lXP_012816595.1 CTH1 <27..170 CDD:227395 47/123 (38%)
zf-CCCH 172..196 CDD:459885 2/28 (7%)

Return to query results.
Submit another query.