DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tis11 and zfp36l1b

DIOPT Version :9

Sequence 1:NP_001259490.1 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_955943.1 Gene:zfp36l1b / 323671 ZFINID:ZDB-GENE-030131-2391 Length:348 Species:Danio rerio


Alignment Length:426 Identity:130/426 - (30%)
Similarity:174/426 - (40%) Gaps:126/426 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SKYVTMNDHLGDFDCNEVRKEIRMLLAHGAN---------LDQQHQQQP------HRHHGGLTRT 73
            :|.:|.|..|..       ..::.:.:.|||         ||::....|      .||...:|.:
Zfish    18 NKVMTFNSPLSS-------PHLQSVPSMGANSSFTPTGTLLDRKVVGAPSVGLYQRRHSVSVTSS 75

  Fly    74 ISQPAQLIQQQQQQHQQQQQQQPAVASLVTITENLGNMNLHRKLERTQSEPLPPQQ--------- 129
            .|...|.|...:..:.         ||:...:.|..|....|.... ..|.|.|..         
Zfish    76 KSTQNQFINNLKMDNS---------ASINGSSNNKENRFRDRSFSE-NGERLRPSSITCISANGN 130

  Fly   130 -PMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPR 193
             .:|:|||||||||||||.|.||||:|||||||.||||:::||||||||.||||||:|:||||||
Zfish   131 GQVNSSRYKTELCRPFEENGTCKYGDKCQFAHGMHELRSLNRHPKYKTELCRTFHSIGYCPYGPR 195

  Fly   194 CHFVHNADEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNSSSSSSSSGGGGGGG 258
            |||:|||:|.|                          .|....|.|:........|.|..|    
Zfish   196 CHFIHNAEERR--------------------------GPPPLSSFNKMERPRLHHSFSFAG---- 230

  Fly   259 NSINNNNGSQFYLPLSPPLSMSTGSDRESPTGSLSLSPTNSLTSFPFHDALQHGYLASNGAKSNS 323
                        .|       |:|..::|||         |:|..|...|..     .|...||.
Zfish   231 ------------FP-------SSGGSQDSPT---------SVTPPPLFSAED-----LNEWSSNP 262

  Fly   324 SASSTSSASGMGLGMSMGIGQGMIIGQGLGMGHHGPATP-PESPNVPISPV-HTPPPYDVVVSGS 386
            .|.|:...:.:.: .|:|   |..|          |..| |.||.....|: .:||.....:|..
Zfish   263 FAFSSQELANLFV-PSLG---GTTI----------PDLPGPHSPTSFFRPMSESPPSPPDSLSDQ 313

  Fly   387 GAGNNSVGSKQLLQKSVSTPMQQEDTPRLPVFNRLS 422
            ....:|:||    |....:|: .:.|.|||:|:|||
Zfish   314 EGYQSSLGS----QSGSESPL-LDATRRLPIFSRLS 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_001259490.1 zf-CCCH 136..161 CDD:279036 21/24 (88%)
zf-CCCH 174..198 CDD:279036 20/23 (87%)
zfp36l1bNP_955943.1 Tis11B_N 2..118 CDD:282420 22/116 (19%)
zf-CCCH 138..164 CDD:279036 22/25 (88%)
zf-CCCH 176..200 CDD:279036 20/23 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10435
eggNOG 1 0.900 - - E1_COG5063
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I4153
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000616
OrthoInspector 1 1.000 - - otm25344
orthoMCL 1 0.900 - - OOG6_101179
Panther 1 1.100 - - O PTHR12547
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.820

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