DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tis11 and Zfp36l1

DIOPT Version :10

Sequence 1:NP_511141.2 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_058868.1 Gene:Zfp36l1 / 29344 RGDID:62009 Length:338 Species:Rattus norvegicus


Alignment Length:400 Identity:128/400 - (32%)
Similarity:180/400 - (45%) Gaps:89/400 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 FDCNEVR-KEIRML-----LAHGANLDQQHQQQPHRHHGGLTR--TISQPAQLIQQQQQQHQQQQ 92
            ||.:||. |..:||     .|.|..||::....|  ..||..|  :::.|:....|.|.....:.
  Rat    11 FDLSEVLCKGNKMLNYSTPSAGGCLLDRKAVGTP--AGGGFPRRHSVTLPSSKFHQNQLLSSLKG 73

  Fly    93 QQQPAVASLVTITENLGNMNLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQ 157
            :..|.::|..:...:........:|..||.:|...|  :|:|||||||||||||.|.||||:|||
  Rat    74 EPAPTLSSRDSRFRDRSFSEGGERLLPTQKQPGSGQ--VNSSRYKTELCRPFEENGACKYGDKCQ 136

  Fly   158 FAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNADEARAQQAAQAAKSSTQSQSQS 222
            ||||.||||::.||||||||.|||||::|||||||||||:|||:|.||     .|.....|..:.
  Rat   137 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA-----LAGGRDLSADRP 196

  Fly   223 QQSSSQNFSPKSNQSSNQSSNSSSSSSSSGGGGGGGNSINNNNGSQFYLPLSPPLSMSTGSDRES 287
            :...|.:|:...:.::..::.....|.:|                     ::||..:|......|
  Rat   197 RLQHSFSFAGFPSAAATAAATGLLDSPTS---------------------ITPPPILSADDLLGS 240

  Fly   288 PTGSLSLSPTNSLTSFPFHDALQHGYLASNGAKSNSSASSTSSASGMGLGMSMGIGQGMIIGQGL 352
            ||     .|..:...|.|                :|...::..|..|||                
  Rat   241 PT-----LPDGTNNPFAF----------------SSQELASLFAPSMGL---------------- 268

  Fly   353 GMGHHGPAT-----PPESPNVPISPVHTPPPYDVVVSGSGAGNNSVGSKQLLQKSVSTPMQQEDT 412
             .|...|.|     ..|||::..||   |.|.|.:....|..::|..|     .|.|.....:::
  Rat   269 -PGGGSPTTFLFRPMSESPHMFDSP---PSPQDSLSDHEGYLSSSSSS-----HSGSDSPTLDNS 324

  Fly   413 PRLPVFNRLS 422
            .|||:|:|||
  Rat   325 RRLPIFSRLS 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_511141.2 CTH1 <121..>198 CDD:227395 57/76 (75%)
Zfp36l1NP_058868.1 Necessary and sufficient for the association with mRNA decay enzymes and mRNA decay activation. /evidence=ECO:0000250|UniProtKB:Q07352 1..111 25/103 (24%)
Tis11B_N 1..107 CDD:461350 24/97 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..113 6/21 (29%)
CTH1 <115..>177 CDD:227395 51/61 (84%)
Necessary for mRNA decay activation. /evidence=ECO:0000250|UniProtKB:Q07352 185..338 42/216 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..338 21/69 (30%)

Return to query results.
Submit another query.