DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tis11 and oma-1

DIOPT Version :9

Sequence 1:NP_001259490.1 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_501542.1 Gene:oma-1 / 177703 WormBaseID:WBGene00003864 Length:407 Species:Caenorhabditis elegans


Alignment Length:492 Identity:114/492 - (23%)
Similarity:168/492 - (34%) Gaps:171/492 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KSREQDDSHYFE---RGDISKYVTMNDHLGDFDCNEVRKEIRMLLAHGANLDQQHQQQPHRHHGG 69
            ::.|:.|.|:.|   .|..:..|:..||..|..                      |..|:...|.
 Worm     6 ENNEKIDEHHLESSLAGVPTLPVSPLDHAKDLS----------------------QTNPNAQIGD 48

  Fly    70 LTRTISQPAQLIQQQQQ--------QHQQQQQQQPAVASLVTITENLGNMNLHRKLERTQSEPLP 126
            |   ::|.|.||..::|        ||.|..|    |.::.:..:|              ::..|
 Worm    49 L---VTQTANLIAIKKQLLEDIAFNQHIQSMQ----VRAIQSFPQN--------------NQVAP 92

  Fly   127 PQQPMNTSR-----------YKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHP----KYKT 176
            |.|..:..|           |||.:|:.:.|:..|.:.:.|:||||..|||.....|    ||||
 Worm    93 PFQQFDPRRRGLARMQKPESYKTVICQAWLESKTCSFADNCRFAHGEEELRPTFVEPLQNNKYKT 157

  Fly   177 EYCRTFHSVGFCPYGPRCHFVH-----NADEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQ 236
            :.|..:.:.|.||||.||.|:|     || ..||.:..:.::....:..:.|.  .|:..     
 Worm   158 KLCDKYTTTGLCPYGKRCLFIHPDHGPNA-YIRADKLLEVSQRHALADIRDQM--EQHIM----- 214

  Fly   237 SSNQSSNSSSSSSSSGGGGGGGNSINNNNGSQFYLPLSP---PLSM-STGSDRESPTGSLSLSPT 297
                                       .||.....|||.   ||.| :..|..:.|...|.|.||
 Worm   215 ---------------------------TNGRIAAPPLSAIQHPLEMFARPSTPDEPAAKLPLGPT 252

  Fly   298 NSLTSFP--------FHDALQHGYLASNGAKS------------------NSSASSTSSASGMGL 336
            ...|..|        .|||        .||.:                  |.:....|....|.|
 Worm   253 PVSTRGPRYELPTKELHDA--------EGAMTYPPSRWPLDPSMFALDAWNMAHRPASPLDSMVL 309

  Fly   337 GMSMGIGQ-GMIIGQGLGMGHHGPATPPESPNVPISPVHTPPPYDVVVSGSGAGN---------N 391
            |.:...|. ||:..|....|..|           .|...:.|..|:..|...|.:         |
 Worm   310 GSAPNAGSFGMLGKQNTPGGVSG-----------YSSAGSTPSQDLSSSSLNAASAAAAAAYFAN 363

  Fly   392 SVGSKQLLQKSVST-PMQQEDTP--RLPVFNRLSSGV 425
            |..::.||.|||:| ||...:.|  .:|.|::|:..:
 Worm   364 SAVAQSLLMKSVATDPMMSCNGPFSPMPGFDQLAENM 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_001259490.1 zf-CCCH 136..161 CDD:279036 9/24 (38%)
zf-CCCH 174..198 CDD:279036 12/23 (52%)
oma-1NP_501542.1 zf-CCCH <94..179 CDD:325094 30/84 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165260
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5063
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 76 1.000 Inparanoid score I3841
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12547
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.890

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