DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tis11 and zfp36

DIOPT Version :9

Sequence 1:NP_001259490.1 Gene:Tis11 / 32222 FlyBaseID:FBgn0011837 Length:436 Species:Drosophila melanogaster
Sequence 2:NP_001106542.1 Gene:zfp36 / 100127733 XenbaseID:XB-GENE-991815 Length:313 Species:Xenopus tropicalis


Alignment Length:324 Identity:95/324 - (29%)
Similarity:117/324 - (36%) Gaps:119/324 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 PLPPQ--QPMNTS---------RYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTE 177
            |.||.  .|:.|:         ||||||||.|.|.|.||||.|||||||..|||..:||||||||
 Frog    81 PAPPPGFPPLKTALPALPAPSPRYKTELCRTFSETGICKYGAKCQFAHGKIELREPNRHPKYKTE 145

  Fly   178 YCRTFHSVGFCPYGPRCHFVHNADEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSS 242
            .|..|:..|.||||.||:|:|:                     .|:|.:||:.       ..||.
 Frog   146 LCHKFYLYGECPYGSRCNFIHH---------------------PSEQGTSQHV-------LRQSL 182

  Fly   243 NSSSSSSSSGGGGGGGNSINNNNGSQFYLPLSPPLSMSTGSDRESPTGSLSLSPTNSLTSFPFHD 307
            :.|...|..|                     |||..........|...|:|..|::.|...|.  
 Frog   183 SYSGVPSKRG---------------------SPPPPGLPDPAAFSRAPSVSPPPSSELLFSPI-- 224

  Fly   308 ALQHGYLASNGAKSNSSASSTSSASGMGLGMSMGIGQGMIIGQGLGMGHHGPATPPESPNVP--- 369
                      ..::.|..||..||.......|....:...|.|.| :..|.....|...::|   
 Frog   225 ----------PTEARSHVSSLRSADSYSHCCSCRCSRAGTITQDL-LSTHMLLRSPSCSSLPETE 278

  Fly   370 ------ISPV-----HTPPPYDVVVSGSGAGNNSVGSKQLLQKSVSTPMQQEDTPRLPVFNRLS 422
                  .|||     |:|||                                .|.|||:|||||
 Frog   279 CYSSGSESPVFEQSYHSPPP--------------------------------PTKRLPIFNRLS 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tis11NP_001259490.1 zf-CCCH 136..161 CDD:279036 19/24 (79%)
zf-CCCH 174..198 CDD:279036 14/23 (61%)
zfp36NP_001106542.1 CTH1 <104..174 CDD:227395 45/90 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000616
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12547
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2078
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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