DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tomosyn and AT5G05570

DIOPT Version :9

Sequence 1:NP_001162735.1 Gene:Tomosyn / 32217 FlyBaseID:FBgn0030412 Length:1470 Species:Drosophila melanogaster
Sequence 2:NP_196176.1 Gene:AT5G05570 / 830440 AraportID:AT5G05570 Length:1124 Species:Arabidopsis thaliana


Alignment Length:1160 Identity:232/1160 - (20%)
Similarity:389/1160 - (33%) Gaps:376/1160 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGVDAHAKHEGESECAVLFAQFLVNEGALVTVT 110
            |.|.:.:..||||:|.|||:|...|.|:::|...::|......:.....|  :|:.|:|.||:::
plant    42 GIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIEAILASPKQLPFKNL--EFMQNQGFLVSIS 104

  Fly   111 ADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIHVV------------- 162
            .::.|.:|.:..:.|  ..|||:: ..:|...:..|:.::|||.|.|.:.|:             
plant   105 NENEIQVWDLDLRQP--ASSLKWE-SNITAFAILHGTGYMYVGDEYGMVSVLNYSADEGKLLQLP 166

  Fly   163 -HIDTFALSGYIINWNKAIEVVRTSHP--GAVIALCDNPLD-ANKLLIAFECGLLVLWD------ 217
             ::.|.|||          |....|.|  ..|:.|...|.. ..:|||||..|||.|||      
plant   167 YYVPTDALS----------EAAGLSSPIDYPVVGLLSQPCSKGTRLLIAFSNGLLFLWDASEDHV 221

  Fly   218 -------------------LKAKCAELRWQAAEA--VKSLAW-HYEGKYFVSSHTDGSICSWPTK 260
                               |:|...||.....:.  :.||.| ..:|......:.||.|..|...
plant   222 VLVRGNKDLPVEGKTVADSLEASHDELSNLELDGKEISSLCWASTDGSVLAVGYVDGDILFWDFS 286

  Fly   261 --PQAKPQSQVCPHAKINKDGNAEKCKPI----YKVDLKSSATGETFTIFSG------------G 307
              .:.||.:.|   .|:.. .:|||..|:    :.:|:...::|....|:.|            |
plant   287 DGQKGKPSNHV---VKLQL-SSAEKRLPVIVMHWCLDVSRKSSGGKLFIYGGDIIGSDEVLTMLG 347

  Fly   308 MPSEKGSKS-NCITVMVGKATTVLEMEHAVCD--------------FITLCENPWPCETQEPYAI 357
            :....|... .|    ||:|.  |.:..:..|              |:.|..||...:..:..::
plant   348 LDWSSGMGGLKC----VGRAD--LTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQAYDDTSL 406

  Fly   358 AVLLQYDLVLIDLLTPGFPCFESPYP-----MDLHESPVTCCTY----LTDCPSDLVPAFYSVGR 413
            |.|:......|. ::|      .|||     ||.|   :|..|:    :.|..|..:.......:
plant   407 ASLMSQKENKIS-VSP------LPYPMVVPTMDPH---MTVATFSALNVNDKTSLALSEIVLAAK 461

  Fly   414 TTTSKKSCFSEREWPISGGEWSPA-SCSYSEIVITGHQDGSLKFWDSGAGTLQILYKLKTAKMFE 477
            ..|.:.......:||::||..|.. ......:.:.|:||||::.||:....|.::|.|       
plant   462 ARTPRTPSGESAQWPLTGGVPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYIL------- 519

  Fly   478 KPRSHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVMLFK---------FRKVESTSE--- 530
            :|::.|...   :....:|.....||::..|.|....|.|.|:|         ...|.:|.:   
plant   520 EPKASVIDI---TGVDASVTAFCFCSKTSCLAVGNECGMVRLYKLVGHTSGGTLEVVTNTEKKGL 581

  Fly   531 --VLVLEIPILYENFDDIYGTSPECDFLTGHQVQKAE------SSDSDKTAECSLKVRNGAQRKP 587
              |..|.:.|.|. .....|:     .|..|.:.:.:      :.....:..|:|:.....:|..
plant   582 AIVTTLTLWICYA-LSHAVGS-----LLVAHHLHQEDGPQWLAAFSFLSSPVCTLQFVQSTRRLA 640

  Fly   588 PGFQ-----------SQLVCLTTGPNRRNVQVTSLCISSSYG--------------------LMA 621
            .||:           ..::.:|...:.....:.||.:.||..                    |:.
plant   641 VGFKCGKVAVLDIGVPSVLFVTNSLSDSGSPIKSLYVKSSSAPTGSKSDPTDHNSINSEDDLLLC 705

  Fly   622 YGTEYGLVII-----DIIQKICLLSVACPDLYGAH-------------DPYSRTPKSPKRIENKE 668
            ..|:.|..|:     ..|...||..:..|.....|             :..:..|....:.|||.
plant   706 AMTKDGQTILLDGNTGKILASCLRPLKNPTAICMHIIENCYENYETPSEKPAENPSGKDKHENKS 770

  Fly   669 -----EQSRSPSSDQLNDTT-----------------SPDS------------------------ 687
                 .:|.||..:| |..|                 |.|:                        
plant   771 HIIKASESHSPDGEQ-NAVTETKLIDQIFANSLFLMCSEDALRLYTVKSLSQGSLESIMEVNLPR 834

  Fly   688 -------------------------------PSLEFVPEAGETSAHDGVATATSSRPSSPDPV-- 719
                                           |:||.|.|:...|     ....:.:|:....|  
plant   835 PCCWMGILKKDGRECAVLLFYRTGHIEIRSFPNLEVVGESSLLS-----LLRWNFKPNMEKTVCS 894

  Fly   720 --------VNSARETLLSGSAAAT----------------AAAAASAAVMMAKSPQRDDAAPKEL 760
                    ||.....:||..|.|.                ||||.:....::...:..|.|||.|
plant   895 DDFGHVVLVNGCEVAILSFLAHANGFRLPESLPLLHDKVLAAAADATFSHISVHKKNHDGAPKFL 959

  Fly   761 QDRRKSMSWKTFNLKRQLSKVNMKIGGLNVNTDMESLKNSSIFYTPKEVSP-------------- 811
            .:..|.....|   ::::.:|.          |...|.|  ||..|..:.|              
plant   960 SNIIKGFRSST---EQKMDQVQ----------DFSHLGN--IFSNPPYLKPSDTGGDDEKIVELN 1009

  Fly   812 ----EAATP----PATEEEATPEGKEDESLDDGEMATNAGAAAAASPS----PAVRGKFRSSTTD 864
                |...|    |.||::  .:.|:|:..|..::..  ||::.|.|.    ..::.|:|.:   
plant  1010 IDDIEIDEPVIILPLTEKD--KKEKKDKRTDKEKLFD--GASSDAQPKTRTVDEIKSKYRKA--- 1067

  Fly   865 SPDEGASSSIASGIRRVDFEQPAGVEVERPNNLPLADAPAPLKPARQKFKEKSRD 919
                |.:|:|||..:  |.....|.::||     ::...|.|:...:.|...:.:
plant  1068 ----GETSAIASQAK--DKLHERGEKLER-----ISQRTAELQDNAENFASMAHE 1111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TomosynNP_001162735.1 WD40 52..257 CDD:295369 65/249 (26%)
WD40 <55..257 CDD:225201 65/246 (26%)
WD40 repeat 95..133 CDD:293791 11/37 (30%)
WD40 repeat 138..184 CDD:293791 13/59 (22%)
WD40 repeat 192..226 CDD:293791 16/59 (27%)
LLGL 269..375 CDD:285555 26/136 (19%)
R-SNARE_STXBP5_6 1403..1463 CDD:277226
AT5G05570NP_196176.1 WD40 repeat 88..114 CDD:293791 8/27 (30%)
WD40 repeat 121..181 CDD:293791 16/70 (23%)
WD40 repeat 188..225 CDD:293791 14/36 (39%)
WD40 repeat 258..283 CDD:293791 7/24 (29%)
R-SNARE_STXBP5_6 1060..1117 CDD:277226 14/66 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1983
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I1822
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000702
OrthoInspector 1 1.000 - - mtm958
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10241
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X453
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.960

Return to query results.
Submit another query.