DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tomosyn and DAW1

DIOPT Version :9

Sequence 1:NP_001162735.1 Gene:Tomosyn / 32217 FlyBaseID:FBgn0030412 Length:1470 Species:Drosophila melanogaster
Sequence 2:NP_001190926.1 Gene:DAW1 / 829708 AraportID:AT4G35560 Length:1050 Species:Arabidopsis thaliana


Alignment Length:1063 Identity:216/1063 - (20%)
Similarity:368/1063 - (34%) Gaps:281/1063 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RQSVQPQATRQEQEIQEQLKADHFTLKKTFRHGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRP 78
            ::.|:..|.:......|.|:|:....:....:|.|.....||:||.||:||:..|.|.|::.|:.
plant     4 KKLVEIAAKKPGGSSSEGLRANDVEPRIALHYGIPSGSHLFAYDPFQKILAVSTKDGRIKLFGKD 68

  Fly    79 GVDAHAKHEGESECAVLFAQFLVNEGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHL 143
            ...|....|..|...  |.:|:.|:|.|:.|.:.:.|.:|.:.:|   ::..:......:|...:
plant    69 QTQALLVSEETSTSR--FLEFVQNQGILLNVNSKNQIEVWDLDKK---LLSHVHVFNGEITSFRV 128

  Fly   144 PVGSKWLYVGTEKGNIHVVHIDTFALSGYIINWNKAIEV-------------VRTSHPGAVIALC 195
            ...:.:.|||...||:.|..|:.        :.|:.|::             :..|...:|:::.
plant   129 MQHTPYFYVGDSSGNVSVFKIEQ--------DSNQVIQLEYTIPYLASNGSPIEASEDTSVVSIL 185

  Fly   196 DN-PLDANKLLIAFECGLLVLWDLKAKCAELRWQAAEAVKS-------LAWHYEGKYFVS-SHTD 251
            .. ..::.::|:.|..|.:.|||:|.....|:......||.       ..|.......|| .:::
plant   186 PQLTAESKRILLVFSSGFIALWDIKESKPILKTGVHGMVKQDTKKATCACWVCPSGSRVSVGYSN 250

  Fly   252 GSICSW--PTKPQAKPQS--QVCPHAKINKDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEK 312
            |.|..|  |:|.:..|:|  .:|   |:|....:||. ||  ..||        .:::.|..|..
plant   251 GDILIWSIPSKGECSPESSAMIC---KLNLGYKSEKI-PI--ASLK--------WVYAEGKASRV 301

  Fly   313 ---GSKSNCITVMV---GKATTVLEMEHAVCDFITLCENPWPCETQEPYAIAV------------ 359
               ||.||.:.|::   ...|.::::...|.:         ||...|.....|            
plant   302 YVIGSSSNSLQVVLLNEQTETRMIKLGLHVSE---------PCADMEMIIADVNEQSKHKQDFLF 357

  Fly   360 -------LLQYDLVLIDLL--------TPGFP---CFESPYPMDLHESPVTCCTYLTDCPS---- 402
                   :..||..:|:..        :|..|   ..:.|:.   ..|.:|...:||: ||    
plant   358 VLGKSGRVYAYDDYMIEKYLIQSQSKSSPSLPKETVVKLPFS---DSSSITVGKFLTN-PSHLLN 418

  Fly   403 -----------DLVP--AFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQDGSL 454
                       |.||  .|::|.: .:|:.:.|             |.......:.||||.||::
plant   419 LSDEDYAQLAKDAVPFLPFHTVPK-ESSRSAHF-------------PGFTKVKNVYITGHCDGTI 469

  Fly   455 KFWDSGAGTLQILYKLKTAKMFEKPRSHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVML 519
            ..||.......::..||..::.:...|.         ...|:..:...|.||.|......|.|.|
plant   470 SVWDMTCSFPILVLFLKEQQIDQDVSSR---------GNAALTALHYDSNSRLLVSGDHNGMVRL 525

  Fly   520 FKFRKVESTSEVLVLEIPILYEN-FDDIYGT----------SPECDFLTGH--QVQKAES----- 566
            ::|:..           |.|.|| |....|:          |.:...|||.  .:||:::     
plant   526 YRFKPE-----------PYLTENSFIPFQGSLKKGNNHIVQSVKYIKLTGSITCIQKSQNSKHLA 579

  Fly   567 --SDSDKTAECSLKVRNGAQRKP------PG-----FQSQLVCLTTGPNRRNVQVTSLCISSSYG 618
              ||....:...::..|....|.      ||     |:|   |:..| ..:||.|.::..||.:.
plant   580 IGSDQGHVSLVDIEEANVLYTKHIASDICPGIISLQFES---CIVQG-FEKNVLVVAMRDSSVFA 640

  Fly   619 LMA-YGTEYGLVIIDIIQKICLLSVACPDLYGAHDPYSRTPKSPKRI------ENKEEQSRS--- 673
            |.: .|...|..:|                         .||.|.::      :.|::.|.:   
plant   641 LDSDTGNMIGTNMI-------------------------KPKKPFKVLYMQILDGKQDTSGNGFD 680

  Fly   674 PSSDQLNDTTSPDSPSLEFVPEAG---ETSAH--DGVATATSSRPSSPDPVVNSARETLLSGSAA 733
            .|.:...:..|...||:....|..   .:.||  .||......:..|..|:.:::  |....|..
plant   681 TSRESTVEEISIRQPSVLVCSEKAIYIYSLAHVVQGVKKVLHKKKFSSSPICSAS--TFYGTSGV 743

  Fly   734 ATAAAAASAAVMMAKSPQ-------------RDDAAPKELQDRRKSMSWKTFNLKRQLSKVNMKI 785
            ..........|.:...|:             .....|..|.:...|.||.               
plant   744 GLTLVFTDGTVEIRSLPELSQLKQTSIRGFTYSSPKPNSLPEITISASWD--------------- 793

  Fly   786 GGL-NVNTDMESLKNSSIFYTPKEVSPEAATPPATEEEATPEGKEDESLDDGEMATNAGAAAAAS 849
            |.| .||.|.|.:.:|        |.|:..|.... |......|:|.|:....:.|::......|
plant   794 GDLVMVNGDDELIVSS--------VLPQKETFRLV-ESMNRVYKKDNSVCHEGIITSSSPREKKS 849

  Fly   850 PSPAVRGKFRSSTTDSPDEGASSSI---ASGIRRVDFEQPAGVE----------VERPNNLPLAD 901
            ...:|.......|||:..|.:..:|   :......:|.....||          ||....|.:.|
plant   850 MFGSVFKTKSKRTTDTEPESSKETIEELSKIFSTANFPWNNNVENSREINTITRVEDEEELDIDD 914

  Fly   902 APAPLKPARQKFKEKSRDQRLLS 924
            .........|:.:||.::|.:||
plant   915 IDIDDHHPNQQQQEKPKEQGILS 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TomosynNP_001162735.1 WD40 52..257 CDD:295369 51/226 (23%)
WD40 <55..257 CDD:225201 50/223 (22%)
WD40 repeat 95..133 CDD:293791 9/37 (24%)
WD40 repeat 138..184 CDD:293791 10/58 (17%)
WD40 repeat 192..226 CDD:293791 7/34 (21%)
LLGL 269..375 CDD:285555 26/138 (19%)
R-SNARE_STXBP5_6 1403..1463 CDD:277226
DAW1NP_001190926.1 WD40 28..333 CDD:225201 76/331 (23%)
WD40 45..>264 CDD:295369 53/231 (23%)
WD40 repeat 124..159 CDD:293791 10/42 (24%)
WD40 repeat 163..191 CDD:293791 2/27 (7%)
WD40 repeat 231..276 CDD:293791 12/47 (26%)
WD40 repeat 334..380 CDD:293791 7/45 (16%)
WD40 repeat 453..487 CDD:293791 9/33 (27%)
WD40 <460..529 CDD:295369 19/77 (25%)
WD40 repeat 495..553 CDD:293791 16/77 (21%)
Lgl_C 499..827 CDD:285762 76/393 (19%)
WD40 repeat 566..602 CDD:293791 5/35 (14%)
WD40 repeat 611..669 CDD:293791 16/86 (19%)
R-SNARE_STXBP5_6 983..1042 CDD:277226
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1983
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I1822
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000702
OrthoInspector 1 1.000 - - mtm958
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10241
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.960

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