Protein Alignment CG11085 and scro

DIOPT Version :10

• Sequence 1: NP_572815.3
• Gene: CG11085 / 32213
• FlyBaseID: FBgn0030408
• Length: 295
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 417
• Identity: 102/417 - (24%)
• Similarity: 147/417 - (35%)
• Gaps: 147/417 - (35%)

  Fly     3 SSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPD--STAAGCQQELLLSHHHRRFT- 64
            |.|..||...:.   ...|.|:..:|:.:::       ||.:  ||||..    .::|||...:
  Fly    42 SPKDTLIHTAIS---QHHQVDTSTKLNTNET-------STQNTVSTAAAA----AVAHHHHNLSS 92

  Fly    65 -HHDE-------------------------SSVE-------------------SCLSATRGPGSG 84
             ||.:                         |.:|                   |..|:...||:.
  Fly    93 IHHLQNLHSQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTL 157

  Fly    85 TGSGGGGGGGGG-----GGVAS--GLSAAAAAAGVAAGLLAAAA---SGANGDRDA------NGG 133
            |.|........|     .||.:  |.:...:.||....:..:|:   |.||..|.|      :..
  Fly   158 TTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASWYGSTANDPRFAISRLMSSSA 222

  Fly   134 SGPGSGGGTSGGYAEHKLQLSKSGRKP----RRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVA 194
            ||..|..|...|.|...:..||..:.|    |:||..||.||:..|||:|:.|:|||..:|..:|
  Fly   223 SGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKRRVLFTQAQVYELERRFKQQRYLSAPEREHLA 287

  Fly   195 ETLNLSETQVKTWYQNRRTKWKRQ--NQLRLEQLRHQATMEK------DFVVQDG---------- 241
            ..::|:.||||.|:||.|.|.|||  .:...||.:|......      ..:|:||
  Fly   288 SLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSS 352

  Fly   242 ---------------------GGA------------GGL----GCCPSGLSSSFSAAAAAA---- 265
                                 |.|            |||    |..|:..|...|::..|:
  Fly   353 QSQQHGTNSTSAGNNTGSANNGNANSGIVSVTANVSGGLNLITGDAPNSHSPDTSSSLLASYGTV 417

  Fly   266 -----AAASNPC-NFLTSAAAAAIFRN 286
                 |....|| |.|.|.:.|..:||
  Fly   418 GGSNVAMLQQPCNNTLMSNSLAMAYRN 444

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG11085	NP_572815.3	Homeodomain	161..217	CDD:459649	27/55 (49%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	27/55 (49%)