DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11085 and msx2b

DIOPT Version :9

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_571351.3 Gene:msx2b / 30531 ZFINID:ZDB-GENE-980526-492 Length:241 Species:Danio rerio


Alignment Length:210 Identity:60/210 - (28%)
Similarity:92/210 - (43%) Gaps:44/210 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LSNDDSDIDIEDRSTPDSTAAGCQQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGG 92
            |...|.|.|:|.|.|..|:.....:.|:.||...:........|.|..:.|.             
Zfish     7 LKESDGDRDMEQRKTQVSSHPFSVESLISSHKTNKDFERRREDVSSQFAQTE------------- 58

  Fly    93 GGGGGGVASGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTS----GGYAEHK--- 150
                      :..:..:||:....:...:...:        ..|.....||    ..|::.:   
Zfish    59 ----------IRDSCGSAGIPKHFMLQTSPVKS--------ESPEPDDCTSWVMNSRYSQTRQES 105

  Fly   151 ---LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRR 212
               |:..|:.|||   ||.||.:||..||||||.::|||:|:|::.:.:|.|:|||||.|:||||
Zfish   106 PCPLRKHKTNRKP---RTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRR 167

  Fly   213 TKWKRQNQLRLEQLR 227
            .|.||..:..||:|:
Zfish   168 AKAKRLQEAELEKLK 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeobox 163..216 CDD:278475 30/52 (58%)
msx2bNP_571351.3 Homeobox 118..171 CDD:278475 31/55 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000776
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.