DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and hoxc4a

DIOPT Version :10

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_571197.1 Gene:hoxc4a / 30345 ZFINID:ZDB-GENE-990415-112 Length:268 Species:Danio rerio


Alignment Length:117 Identity:41/117 - (35%)
Similarity:68/117 - (58%) Gaps:16/117 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 SKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQ 218
            |.:|.:|:|.|||:|..|:..||::|...:||:...|.::|.:|.|||.|:|.|:||||.|||:.
Zfish   148 SYNGAEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLVLSERQIKIWFQNRRMKWKKD 212

  Fly   219 NQLRLEQLRHQATMEKDFVVQDGGGAGGLGCCPSGLSSSFSAAAAAAAAASN 270
            ::|...::|..::.             |:.   ||.::|.:|...|||:.:|
Zfish   213 HRLPNTKVRSSSST-------------GIS---SGSNTSSAAGVVAAASTTN 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649 26/55 (47%)
hoxc4aNP_571197.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..129
Antp-type hexapeptide 133..138
Homeodomain 155..211 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..268 11/53 (21%)
Blue background indicates that the domain is not in the aligned region.

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