DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and Alx4

DIOPT Version :10

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_001100023.1 Gene:Alx4 / 296511 RGDID:1310201 Length:399 Species:Rattus norvegicus


Alignment Length:237 Identity:58/237 - (24%)
Similarity:94/237 - (39%) Gaps:55/237 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GGGGVASGLSAAAAA----------------AGVAAGLLAAAASGANGDRDANGGSGPGSGGGTS 143
            |.||..:.|.....|                .|:....|:...:||.|.:|..|...|.      
  Rat   130 GSGGHNAALQVPCYAKESNLGEPELPPDSEPVGMDNSYLSVKETGAKGPQDRAGAEIPS------ 188

  Fly   144 GGYAEHKLQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 208
               ...|.....|..|.||.||.||..||..||:.|:...|..|..|..:|...:|:|.:|:.|:
  Rat   189 ---PLEKTDSESSKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWF 250

  Fly   209 QNRRTKWKRQNQL-RLEQLR----------------HQATMEKDFVVQDGGGAGGLGCC------ 250
            ||||.||:::.:. :::|:|                :.|.::....:.:.|.|..:..|      
  Rat   251 QNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWIGNNGAASPVPACVVPCDP 315

  Fly   251 -PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVH 291
             |:.:|..   |....:.||:..:||:.:.|.:   :||..|
  Rat   316 VPACMSPH---AHPPGSGASSVSDFLSVSGAGS---HVGQTH 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649 25/55 (45%)
Alx4NP_001100023.1 Homeodomain 203..259 CDD:459649 25/55 (45%)
OAR 375..393 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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