DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and Msx3

DIOPT Version :9

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_034966.1 Gene:Msx3 / 17703 MGIID:106587 Length:204 Species:Mus musculus


Alignment Length:205 Identity:68/205 - (33%)
Similarity:88/205 - (42%) Gaps:70/205 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RSTPDSTAAGCQQELLLSHHHRRFTHHDES-----SVESCLSATRGPGSGTGSGGGGGGGGGGGV 99
            |:|.|..|||.:         .|...|.|.     ||||.|.|.|.|||.:|.            
Mouse     3 RATFDMNAAGLE---------ARGGGHTEHGPLPFSVESLLEAERVPGSESGE------------ 46

  Fly   100 ASGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK------------LQ 152
                      .||...|               |.|.||:....    ..|.            |:
Mouse    47 ----------LGVERPL---------------GASKPGAWPPP----VAHSCPPRAPSPPPCTLR 82

  Fly   153 LSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKR 217
            ..|:.|||   ||.||.|||..|||||..::|||:|:|::.:.:|:|:|||||.|:||||.|.||
Mouse    83 KHKTNRKP---RTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 144

  Fly   218 QNQLRLEQLR 227
            ..:..||:|:
Mouse   145 LQEAELEKLK 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeobox 163..216 CDD:278475 30/52 (58%)
Msx3NP_034966.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 39..89 14/90 (16%)
Homeobox 90..143 CDD:278475 31/55 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000776
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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