DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11085 and Phox2a

DIOPT Version :9

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_032913.1 Gene:Phox2a / 11859 MGIID:106633 Length:280 Species:Mus musculus


Alignment Length:235 Identity:65/235 - (27%)
Similarity:86/235 - (36%) Gaps:55/235 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 SSVESCLSATRGPGSGTGSGGGGGGGGGGGVASGLSAAAAAAGVAAGLLAAA--ASGANGDRDAN 131
            :|.:||::|......|   ..|.....||...|.|..|..|||.....|.::  |.||..|..  
Mouse     7 NSYDSCVAAMEASAYG---DFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQ-- 66

  Fly   132 GGSGPGSGGGTSGGYAEHKLQLSKSG----RKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSD 192
              ..|.|.       ..:|.....||    ||.||.||.||.|||..|||.|....|..:..|.:
Mouse    67 --PAPYSA-------VPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREE 122

  Fly   193 VAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGC-------- 249
            :|..::|:|.:|:.|:||||.|:::|         .:|...|......|...|...|        
Mouse   123 LALKIDLTEARVQVWFQNRRAKFRKQ---------ERAASAKGAAGATGAKKGEARCSSEDDDSK 178

  Fly   250 ------------------CPSGLSSSFSAAAAAAAAASNP 271
                              .||..|...|.:...||..|.|
Mouse   179 ESTCSPTPDSTASLPPPPAPSLASPRLSPSPLPAALGSGP 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeobox 163..216 CDD:278475 23/52 (44%)
Phox2aNP_032913.1 Homeobox 94..147 CDD:395001 23/52 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..244 14/83 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..280
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.