DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and hoxc13

DIOPT Version :9

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:XP_002936691.1 Gene:hoxc13 / 100487255 XenbaseID:XB-GENE-478832 Length:306 Species:Xenopus tropicalis


Alignment Length:60 Identity:22/60 - (36%)
Similarity:37/60 - (61%) Gaps:0/60 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 RKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKR 217
            |:.|::|..:|..||..||:::...|:::...|..::...:|||.||..|:||||.|.|:
 Frog   234 RRGRKKRVPYTKIQLKELEKEYAASKFITKEKRRRISTATSLSERQVTIWFQNRRVKEKK 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeobox 163..216 CDD:278475 19/52 (37%)
hoxc13XP_002936691.1 HoxA13_N 31..142 CDD:372013
Homeobox 239..293 CDD:365835 19/53 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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