DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and hoxc3

DIOPT Version :10

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 / 100190990 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis


Alignment Length:135 Identity:43/135 - (31%)
Similarity:66/135 - (48%) Gaps:26/135 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 RRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQ 225
            :|.|||:|::||..||::|...:||....|.::|:.|||||.|:|.|:||||.|:|:.::     
 Frog   164 KRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAKLLNLSERQIKIWFQNRRMKFKKDHK----- 223

  Fly   226 LRHQATMEKDFVVQDGGGAGGLGCCPSGLSSSFSAAA---AAAAAASNPCNFLTSAAAAAIFRNV 287
                           |.|.||   .|.|||.|.|.:.   :........|.:....|..|..::.
 Frog   224 ---------------GKGGGG---SPGGLSPSSSPSLMPYSGNLPLDGDCGYEVPMATGAYNKSP 270

  Fly   288 GYVHG 292
            |.::|
 Frog   271 GNMYG 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeodomain 161..217 CDD:459649 27/55 (49%)
hoxc3XP_002936696.1 Homeodomain 164..220 CDD:459649 27/55 (49%)
DUF4074 335..392 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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