DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11085 and pax3b

DIOPT Version :9

Sequence 1:NP_572815.3 Gene:CG11085 / 32213 FlyBaseID:FBgn0030408 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_001315326.1 Gene:pax3b / 100150137 ZFINID:ZDB-GENE-080917-53 Length:469 Species:Danio rerio


Alignment Length:195 Identity:54/195 - (27%)
Similarity:70/195 - (35%) Gaps:71/195 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 AAAASGANGDRDANGGSGPGSGGGTSGGYAEHKLQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQ 182
            |.:..|...||     |.|...|  |...:|..|.|.   ||.||.||.||..||..|||.|...
Zfish   190 AHSIEGILADR-----SSPSDEG--SEVESEPDLPLK---RKQRRSRTTFTADQLEELERAFERT 244

  Fly   183 KYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQ---NQL----------------------- 221
            .|..:..|.::|:...|:|.:|:.|:.|||.:|::|   |||                       
Zfish   245 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFSHHAMSSLSPYQ 309

  Fly   222 -------------------RLEQLRHQATMEKDFVVQDGGGA---GGLGCCPS------GLSSSF 258
                               |.:.|.|.:.       |..|||   ||...|.|      |.|.:|
Zfish   310 LSESPYPPAALPQDSGTVHRPQPLPHSSH-------QSSGGAGPEGGASYCLSSRHGYTGYSDAF 367

  Fly   259  258
            Zfish   368  367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11085NP_572815.3 Homeobox 163..216 CDD:278475 20/52 (38%)
pax3bNP_001315326.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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