DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXC4 and Ubx

DIOPT Version :9

Sequence 1:NP_055435.2 Gene:HOXC4 / 3221 HGNCID:5126 Length:264 Species:Homo sapiens
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:256 Identity:82/256 - (32%)
Similarity:106/256 - (41%) Gaps:88/256 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    74 GPGNSRGHGPAQA-GHHHPEKSQ----SLCEP-------------APLS--GASASPSPAPPA-- 116
            |.||:.|...|.| |.::|....    |.|.|             :|:|  |.||..:.:...  
  Fly   129 GAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGN 193

Human   117 ----------------------CSQPAPDHPSSAAS-----KQPIVYPWM------------KKI 142
                                  |:.......::|||     .....||||            .||
  Fly   194 GNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKI 258

Human   143 H--------VST-------------VNPNYNG--GEPKRSRTAYTRQQVLELEKEFHYNRYLTRR 184
            .        :||             :.|::.|  |..:|.|..|||.|.||||||||.|.|||||
  Fly   259 RSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRR 323

Human   185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKD----HRLPNTKVRSAPPAGAAPSTLSAATPG 241
            ||||:||:|||:||||||||||||||.||:    ..|...:.::.....||.:..:||..|
  Fly   324 RRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQG 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXC4NP_055435.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..130 18/99 (18%)
Antp-type hexapeptide 135..140 4/16 (25%)
Homeobox 159..213 CDD:395001 42/53 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..264 6/32 (19%)
UbxNP_536752.1 Homeobox 299..352 CDD:395001 42/52 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.810

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