DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and ABCB12

DIOPT Version :10

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_171754.1 Gene:ABCB12 / 839282 AraportID:AT1G02530 Length:1273 Species:Arabidopsis thaliana


Alignment Length:673 Identity:219/673 - (32%)
Similarity:355/673 - (52%) Gaps:60/673 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 EEDTASEQHFDWK-----------RLWTYLEPHLWELIGAVCAALIVAYINIRIP---NLLGDLV 158
            |.|:.|.:|...|           :|:.:.:.  :::...:|.:|......:.:|   .|.|||:
plant     8 EGDSVSHEHSTSKTDEKAKTVPLYKLFAFADS--FDVFLMICGSLGAIGNGVCLPLMTLLFGDLI 70

  Fly   159 NTLARYANTYVMDPINNSFVKDVSKPASNLLSLYMLQSGFTFMYIYLLSRVGEQMAAKMRQDLFT 223
            ::..:..|       |...|..|||.....:.|.:.:.|..|:.:......||:.|||:|.:...
plant    71 DSFGKNQN-------NKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLK 128

  Fly   224 QIVVQDIAFFD-ENRTGELVNRLTADVQDFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHMAAI 287
            .|:.|||.||| |..|||:|.|::.|....:.:..:.|.:.::..:..:||....|.....:..:
plant   129 TILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLV 193

  Fly   288 ALASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAETN 352
            .|.|:|.:.|....:...:...|...||...:|..|.|:.:.:||||.|...|.:.:..::....
plant   194 MLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKYIT 258

  Fly   353 EAAR------LAQKLGYGIAIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGALMAFLVASQGV 411
            .|.:      .:..||.|:.|:...:::.|      .::.||.::..:..:.|:::..::.....
plant   259 SAYKSSIQQGFSTGLGLGVMIYVFFSSYAL------AIWFGGKMILEKGYTGGSVINVIIIVVAG 317

  Fly   412 QRSLAQGSILLGTMIRGMSAGSRVFEFLSLQPQVEL--LRGYIIPQERLHGEIRFENVSFAYPMQ 474
            ..||.|.|..:.....|.:|..::||.:..:|.::.  :.|.::..  :.|:|..::|.|:||.:
plant   318 SMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGD--IRGDIELKDVHFSYPAR 380

  Fly   475 PDHLVLKDFSLTLRPGQTVALVGASGSGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSN 539
            ||..:...|||.:..|.|.||||.|||||||:.:|:||||:|.||.:.:||..|.:....|:||.
plant   381 PDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSK 445

  Fly   540 VLGFIEQQPVLFGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGTQLSG 604
            : |.:.|:||||.:||:|||.|||.:|..:::..|..|:.:..|:..||.|..|.|||.||||||
plant   446 I-GLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQLSG 509

  Fly   605 GQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQNRTTLVIAHRLSTIRNADLI 669
            ||:||||||||:||:||:|:|||||||||..||..||:|||.|:.||||:|:||||||:||||:|
plant   510 GQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMI 574

  Fly   670 VVLDQGRVVETGKHDELM-GKRGLYFELVRQQERRDIQEQVQAVEDVVAVKEQQATATETSTAAT 733
            .|:..|::||.|.|.||: ...|.|.:|:|.||..               |...|..::.::.::
plant   575 AVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEIN---------------KGHDAKPSDMASGSS 624

  Fly   734 IATA---AETSAATVTVGSSSFG 753
            ...:   .....:.::.|:||||
plant   625 FRNSNLNISREGSVISGGTSSFG 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..702 CDD:440747 207/606 (34%)
ABCB12NP_171754.1 PTZ00265 3..1267 CDD:240339 219/673 (33%)
MdlB 690..1272 CDD:440747
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.