DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1824 and Abcb11

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_113948.1 Gene:Abcb11 / 83569 RGDID:619930 Length:1321 Species:Rattus norvegicus


Alignment Length:671 Identity:215/671 - (32%)
Similarity:342/671 - (50%) Gaps:70/671 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 LW-ELIGAVCAALI-VAYINIRIPNLLGDLVNTLARY---------------ANTYVMDPINNSF 177
            :| .|:|.|||.|. :|...|.|  :.|.:.:...:|               .||.|.  ||:||
  Rat    59 IWLMLMGGVCALLHGMAQPGILI--IFGIMTDIFIKYDIERQELEIPGKACVNNTIVW--INSSF 119

  Fly   178 -----------VKDVSKPASNLLSLY------MLQSGFTFMYIYLLSRVGEQMAAKMRQDLFTQI 225
                       :.|:.........:|      :|..|:..:.:::::  |.:...:||:..|.:|
  Rat   120 HQNMTNGTVCGLVDIESEMIKFSGIYAGVGMTVLILGYFQIRLWVIT--GARQIRRMRKIYFRRI 182

  Fly   226 VVQDIAFFDENRTGELVNRLTADVQDFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHMAAIALA 290
            :..:|.:||....|||.:|...|::....:....::..|:..:..:.|.:..|.....:..:.||
  Rat   183 MRMEIGWFDCTSVGELNSRFADDIEKINDAIADQLAHFLQRMSTAMCGLLLGFYRGWKLTLVILA 247

  Fly   291 SVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAETNEAA 355
            ..|.:.:....:|..:...::.......:|..:.:|.||:||||.:...|.:|::.:|.....|.
  Rat   248 VSPLIGIGAAVIGLSIAKFTELELKAYAKAGSIADEVLSSIRTVAAFGGENKEVERYEKNLVFAQ 312

  Fly   356 RLAQKLGYGIAIFQG---LTNFFLNTLVL---STLFMGGHLMSTESLSPGALMAFLVASQGVQRS 414
            |.....|..:..|.|   ...||...|..   |||     ::..|..:||.|:...:.......:
  Rat   313 RWGIWKGMVMGFFTGYMWCLIFFCYALAFWYGSTL-----VLDEEEYTPGTLVQIFLCVILAAMN 372

  Fly   415 LAQGSILLGTMIRGMSAGSRVFEFLSLQPQVELLRGYIIPQERLHGEIRFENVSFAYPMQPDHLV 479
            :...|..|.....|.||.:.:|:.:..||.::.:.|.....:|:.|||.|.||:|.||.:||..:
  Rat   373 IGHASSCLEIFSTGCSAATNIFQTIDRQPVIDCMSGDGYKLDRIKGEIEFHNVTFHYPSRPDVKI 437

  Fly   480 LKDFSLTLRPGQTVALVGASGSGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFI 544
            |.:.|:.::||:|.||||:||:||||...|::|||:|..|.:.|||:.:..::..|||..: |.:
  Rat   438 LDNLSMVIKPGETTALVGSSGAGKSTALQLIQRFYDPCEGMVTLDGHDIRSLNIRWLRDQI-GIV 501

  Fly   545 EQQPVLFGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGTQLSGGQRQR 609
            ||:||||.|:|.||||:|:.||..||:..||:.:.:::|:.|||..:.|.|||.|.|:||||:||
  Rat   502 EQEPVLFSTTIAENIRFGREDATMEDIVQAAKDANAYNFIMALPQQFDTLVGEGGGQMSGGQKQR 566

  Fly   610 IAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQNRTTLVIAHRLSTIRNADLIVVLDQ 674
            :||||||::||:||:||.||||||..|||.||:||:.:....|.:.:||||||:|.||:|:..:.
  Rat   567 VAIARALIRNPKILLLDMATSALDNESEARVQEALNKIQHGHTIISVAHRLSTVRAADVIIGFEH 631

  Fly   675 GRVVETGKHDELMGKRGLYFELVRQQERRDIQEQVQAVEDVVAVKEQQATATETSTAATIATAAE 739
            |..||.|.|:||:.::|:||.||..|.:.|...:                  |||.....||...
  Rat   632 GVAVERGTHEELLERKGVYFMLVTLQSQGDNAHK------------------ETSIMGKDATEGG 678

  Fly   740 TSAATVTVGSSSFGGRANAAQ 760
            |...|.:.||.....||:..|
  Rat   679 TLERTFSRGSYRDSLRASIRQ 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 201/610 (33%)
ABC_membrane 137..415 CDD:279056 66/316 (21%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 120/237 (51%)
Abcb11NP_113948.1 PTZ00265 150..1314 CDD:240339 194/576 (34%)
Interaction with HAX1. /evidence=ECO:0000269|PubMed:15159385 651..674 8/40 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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