DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and ABCB28

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_194275.2 Gene:ABCB28 / 828650 AraportID:AT4G25450 Length:714 Species:Arabidopsis thaliana


Alignment Length:653 Identity:223/653 - (34%)
Similarity:337/653 - (51%) Gaps:81/653 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 EEEEEDTASEQHFDWKRLWTYLEPHLWELIGAVCAALIVAYINIRIPNLLGDLVNTLARYANTYV 169
            ||.:.:..|:....|..||:.:..|...|  :||           :..|||....||:       
plant    81 EESKSEAESKDLISWGLLWSLMSKHKLRL--SVC-----------LLTLLGCSTCTLS------- 125

  Fly   170 MDPINNSFVKDV----SKPASNLLS----LYMLQSGFTFMYIYLLSRVGEQMAAKMRQDLFTQIV 226
            |...:..|.:.:    .:|...|||    ||.|:..||..::..::.:.|.:.|.:|..:|.:::
plant   126 MPVFSGRFFEVLIGVRPEPLWRLLSKIAVLYSLEPIFTIAFVTNMTAIWENVMAILRAQIFRRVL 190

  Fly   227 VQDIAFFDENRTGELVNRLTADVQDFKTSFKQFVS--QGLRSAAQLIGGSISLFMISPHMA-AIA 288
            :|...|||:.:.|||...||:|:....:.....:|  :|.|:..::.|....||.:||.:| .:.
plant   191 IQKAEFFDKYKVGELTGLLTSDLGALNSIVNDNISRDRGFRAFTEVFGTICILFTLSPQLAPVLG 255

  Fly   289 LASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAETNE 353
            |..:...|:...|....:........|||..:..| .|..|.||||||.:.|.|:|.:|.::...
plant   256 LLMLAVSVLVAVYKRSTVPVYKSHGLAQATMSDCV-SETFSAIRTVRSFSGEKRQMSIFGSQILA 319

  Fly   354 AARLAQKLGYGIAIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGALMAFL-------VASQGV 411
            ......|||...:|.:.:|...:...:|:...:||..:.|..|:.|.:::|:       .|.||:
plant   320 YKLSGLKLGTFKSINESITRVAVYISLLALYCLGGSKVKTGELAVGTVVSFIGYTFTLTFAVQGL 384

  Fly   412 QRSLAQ-----------GSILLGTMI-RGMSAG-------SRVFE-----FLSLQPQVEL--LRG 450
            ..:...           .|||....| ..::.|       .:|.:     |||..|.|.:  |..
plant   385 VNTFGDLRGTFAAIDRINSILNAVDIDEALAYGLERDIHTKKVQDENLKLFLSAGPNVNIRHLDK 449

  Fly   451 YIIPQER---------LHGEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASGSGKSTI 506
            |.:...:         ..|::..::|.||||::||..||...||||..|...||||:||:|||||
plant   450 YYMSNLKSTNNLRTLTWAGDVCLDDVHFAYPLRPDVKVLDGLSLTLNSGTVTALVGSSGAGKSTI 514

  Fly   507 ASLVERFYEPSAGNIKLDG--YKLSDISPYWLRSNVLGFIEQQPVLFGTSILENIRYGKPD--AG 567
            ..|:.|||||:.|.|.:.|  .::.|.|.:   :.|:..:.|:||||..|:.|||.||.|:  ..
plant   515 VQLLARFYEPTQGRITVGGEDVRMFDKSEW---AKVVSIVNQEPVLFSLSVAENIAYGLPNEHVS 576

  Fly   568 EEDVYAAARLSQSHDFVTALPDGYATHVGERGTQLSGGQRQRIAIARALLKNPRILILDEATSAL 632
            ::|:..||:.:.:|||:.:||.||.|.|||||..||||||||:||||:||||..|||||||||||
plant   577 KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARSLLKNAPILILDEATSAL 641

  Fly   633 DATSEAEVQKALDTVVQNRTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELV 697
            ||.||..||.||:.::::||||||||||||:::|:.|.|...|:::|.|.|.||:.::|.|..||
plant   642 DAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQKGSYASLV 706

  Fly   698 RQQ 700
            ..|
plant   707 GTQ 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 220/639 (34%)
ABC_membrane 137..415 CDD:279056 75/295 (25%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 125/241 (52%)
ABCB28NP_194275.2 MdlB 92..712 CDD:224055 220/642 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D684058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.880

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