DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and ABCB3

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_192091.1 Gene:ABCB3 / 826951 AraportID:AT4G01820 Length:1229 Species:Arabidopsis thaliana


Alignment Length:638 Identity:226/638 - (35%)
Similarity:348/638 - (54%) Gaps:64/638 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 LLGDLVNTLARYANTYVMDPINNSFVKDVSKPASNLLSLYMLQSGFTFMYIYLLSRVGEQMAAKM 217
            |.|||::::.:       :..|...|:.|||.....:.|.:...|..|:.:......||:.||::
plant    45 LFGDLIDSIGQ-------NQSNKDIVEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARI 102

  Fly   218 RQDLFTQIVVQDIAFFD-ENRTGELVNRLTADVQDFKTSFKQFVSQGLRSAAQLIGGSISLF--- 278
            |......|:.|||.||| |..|||:|.|::.|......:..:.|.:.::..|..:||.:..|   
plant   103 RSLYLKTILRQDIGFFDVETSTGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKG 167

  Fly   279 -------MISPHMAAIALASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRS 336
                   ::|..:.|||.|::|.:|         .|:.|:...|.|:.:| |.|:.|.:||||.|
plant   168 WLLTLVMLVSIPLLAIAGAAMPIIV---------TRASSREQAAYAKAST-VVEQTLGSIRTVAS 222

  Fly   337 SACEYREMQLFEAETNEAARLAQKLGYGIAIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGAL 401
            ...|.:.|:.:....|.|.|.:.|.|:.:.:..|:..|.........::.||.::..:..:.|.:
plant   223 FTGEKQAMKSYREFINLAYRASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEV 287

  Fly   402 MAFLVASQGVQRSLAQGSILLGTMIRGMSAGSRVFEFLSLQPQVEL--LRGYIIPQERLHGEIRF 464
            :..:|.......||.|.:..|.....|.:|..::||.:..:|.::.  |.|.::  |.:.|||..
plant   288 VNVMVTVVASSMSLGQTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVL--EDIRGEIEL 350

  Fly   465 ENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASGSGKSTIASLVERFYEPSAGNIKLDGYKLS 529
            .:|.|:||.:|...|...|||.:..|.|.||||.||||||::.||:||||:||:|::.:||..|.
plant   351 RDVCFSYPARPMEEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLK 415

  Fly   530 DISPYWLRSNVLGFIEQQPVLFGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATH 594
            :....|:|..: |.:.|:||||.:||:|||.|||.:|..|::.|||:|:.:.:|:..||.|..|.
plant   416 EFQLKWIRGKI-GLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETL 479

  Fly   595 VGERGTQLSGGQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQNRTTLVIAHR 659
            |||.||||||||:||||||||:||:||||:||||||||||.||..||:|||.|:.:|||:::|||
plant   480 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHR 544

  Fly   660 LSTIRNADLIVVLDQGRVVETGKHDELM-GKRGLYFELVRQQE---------------------- 701
            |||:||||:|.|:.:|::||.|.|.||: ...|.|.:|:|.|:                      
plant   545 LSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKRLESSNELRDRSINRG 609

  Fly   702 -RRDIQEQVQAVEDVVAV------KEQQATATETSTAATIATAAETSAATVTV 747
             .|:|:.:|.. :|.|:|      :|....:.|.|...:|...|..:....|:
plant   610 SSRNIRTRVHD-DDSVSVLGLLGRQENTEISREQSRNVSITRIAALNKPETTI 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 213/561 (38%)
ABC_membrane 137..415 CDD:279056 69/272 (25%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 130/238 (55%)
ABCB3NP_192091.1 PTZ00265 4..1223 CDD:240339 226/638 (35%)
ABC_membrane 30..286 CDD:279056 67/257 (26%)
ABC_MTABC3_MDL1_MDL2 348..586 CDD:213216 130/238 (55%)
ABC_membrane 666..935 CDD:279056
ABC_MTABC3_MDL1_MDL2 984..1223 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - O PTHR24221
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.