DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and Abcb1b

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_036755.3 Gene:Abcb1b / 24646 RGDID:3318 Length:1275 Species:Rattus norvegicus


Alignment Length:642 Identity:214/642 - (33%)
Similarity:330/642 - (51%) Gaps:79/642 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RKEEEEEDTASEQHFD--------WKRL------WTYLEPHLWELIGAVCAAL------IVAYIN 147
            |::::|...:|::..|        |:.|      |.||      ::|.:||.:      :.|.:.
  Rat   671 RRQDQERRLSSKEDVDEDVPMVSFWQILKLNISEWPYL------VVGVLCAVINGCIQPVFAIVF 729

  Fly   148 IRIPNLLG--DLVNTLARYANTY-----VMDPINNSFVKDVSKPASNLLSLYMLQSGFTFMYIYL 205
            .:|..:..  |...|..|..|.:     ||..|  |||            .|..| ||||     
  Rat   730 SKIVGVFSRDDDHETKQRNCNLFSLLFLVMGMI--SFV------------TYFFQ-GFTF----- 774

  Fly   206 LSRVGEQMAAKMRQDLFTQIVVQDIAFFDE--NRTGELVNRLTADVQDFKTSFKQFVSQGLRSAA 268
             .:.||.:..::|..:|..::.|||::||:  |.||.|..||.:|..:.|.:....::...::.|
  Rat   775 -GKAGEILTKRLRYMVFKSMLRQDISWFDDHKNTTGSLTTRLASDASNVKGAMGSRLAVVTQNVA 838

  Fly   269 QLIGGSISLFMISPHMAAIALASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRT 333
            .|..|.|...:....:..:.:..:|.:|:......|.|...:...:.:.|.:..:..||:.|.||
  Rat   839 NLGTGIILSLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKELEISGKIATEAIENFRT 903

  Fly   334 VRSSACEYREMQLFEAETNEAARLAQKLGYGIAIFQGLTNFFLNTLV----LSTLFMGGHLMSTE 394
            |.|...|    |.||....::.::..:.....|...|:|..|...::    .:....|.:|::.|
  Rat   904 VVSLTRE----QKFETMYAQSLQIPYRNALKKAHVFGITFAFTQAMIYFSYAACFRFGAYLVARE 964

  Fly   395 SLSPGALMAF----LVASQGVQRSLAQG--SILLGTMIRGMSAGSRVFEFLSLQPQVELLRGYII 453
                  ||.|    ||.|..|..::|.|  |.......:...:.|.:...:...|:::......:
  Rat   965 ------LMTFENVMLVFSAVVFGAMAAGNTSSFAPDYAKAKVSASHIIRIIEKIPEIDSYSTEGL 1023

  Fly   454 PQERLHGEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASGSGKSTIASLVERFYEPSA 518
            ....|.|.::|..|.|.||.:|:..||:..|..::.|||:||||:||.||||:..|:||||.|.|
  Rat  1024 KPNWLEGNVKFNGVMFNYPTRPNIPVLQGLSFEVKKGQTLALVGSSGCGKSTVVQLLERFYNPMA 1088

  Fly   519 GNIKLDGYKLSDISPYWLRSNVLGFIEQQPVLFGTSILENIRYGKPD--AGEEDVYAAARLSQSH 581
            |.:.|||.::..::..|||:: ||.:.|:|:||..||.|||.||...  ...|::..|||.:..|
  Rat  1089 GTVFLDGKEIKQLNVQWLRAH-LGIVSQEPILFDCSITENIAYGDNSRVVSHEEIVRAAREANIH 1152

  Fly   582 DFVTALPDGYATHVGERGTQLSGGQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDT 646
            .|:.:||:.|.|.||::||||||||:|||||||||::.|.||:|||||||||..||..||:|||.
  Rat  1153 QFIDSLPEKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1217

  Fly   647 VVQNRTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELVRQQERR 703
            ..:.||.:|||||||||:|||||||:..|:|.|.|.|.:|:.::|:||.:|:...:|
  Rat  1218 AREGRTCIVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQKGIYFSMVQAGAKR 1274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 209/614 (34%)
ABC_membrane 137..415 CDD:279056 71/300 (24%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 125/239 (52%)
Abcb1bNP_036755.3 PTZ00265 54..1269 CDD:240339 212/635 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.