DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and pgp-7

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001361833.1 Gene:pgp-7 / 188697 WormBaseID:WBGene00004001 Length:1152 Species:Caenorhabditis elegans


Alignment Length:612 Identity:208/612 - (33%)
Similarity:322/612 - (52%) Gaps:61/612 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 LIGAVCAALIVAYINIRIPNLLGDLVNTLARYANTYVMDPINNSFV--KDVSKPASNL------L 189
            ||| |..:|:.......:...||:....|....|.     |||..:  .|:.|.....      :
 Worm    44 LIG-VFFSLVTGLCQPFVSYTLGETAQVLVTITNA-----INNKTIDPADLKKAYEQYERGMYQV 102

  Fly   190 SLYMLQSG---FTFMYIY--LLSRVGEQMAAKMRQDLFTQIVVQDIAFFDENRTGELVNRLTADV 249
            .||....|   |||..|.  ::..||:....::|:...::::.:|..:||...||.|...|..::
 Worm   103 VLYFFLCGCAYFTFASIQHAIMKYVGDNTTYRVRKQYISRLLRKDAEYFDNVSTGHLSTVLNDNL 167

  Fly   250 QDFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHMAAIALASVPCVVMFMTYLGKK--LRSLSKS 312
            :.|:..|.:.::.........:.|:...|.....:|:..: .....:.|..::...  :::..|.
 Worm   168 ERFREVFNEKIALIFALLTDFVVGTALAFYTDWRLASYGI-FFSLGIAFSGFINSAGVMKTTGKQ 231

  Fly   313 SQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAETNEAARLAQKLGYGI------AIFQGL 371
            :...| .|..:..:.|...:||.|...:..|::.:..|.....:      |||      :|.:|.
 Worm   232 NTHYA-NAGSIAFQTLGAYKTVCSLNGQNTEIERYTEELKAGEK------YGIHRALMYSISRGF 289

  Fly   372 TNFFLNTLVLSTLFMGGHLMSTESLSPGALMAFLVASQGVQRSLAQGSILLGTMIRGMS--AGSR 434
            |.||.|:|....|::|.:::.:.||.|..::.       :...:..|:..|...:..:|  ||: 
 Worm   290 TYFFCNSLNTVILYVGANMIYSGSLEPAVVVR-------IFHYMMFGAFCLSEALPHISRLAGA- 346

  Fly   435 VFEFLSLQPQVELL--RGYIIPQE--------RLHGEIRFENVSFAYPMQPDHLVLKDFSLTLRP 489
               ..|..|..|:|  ...:|.::        .::|.|.|:||.|:||.:||..|||..|..::.
 Worm   347 ---ISSTAPIAEMLIKEDNVIEKDETDYDVEVEVNGNISFKNVKFSYPTRPDAQVLKGISFDVQN 408

  Fly   490 GQTVALVGASGSGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFIEQQPVLFGTS 554
            |:.:||||||||||||:..|:..:|...:|||.:||..|:|::...|| .|:|.:.|:||||.|:
 Worm   409 GECIALVGASGSGKSTVVQLLLHYYNIDSGNIFIDGMDLNDMNIKRLR-RVIGVVSQEPVLFNTT 472

  Fly   555 ILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGTQLSGGQRQRIAIARALLKN 619
            |.||||:|.|:....::|.|.|.:.::|||.:.|.|..|.||||||||||||:|||||||.|::|
 Worm   473 IEENIRFGNPNVSLPEIYGALRKANAYDFVCSFPKGIKTIVGERGTQLSGGQKQRIAIARTLVRN 537

  Fly   620 PRILILDEATSALDATSEAEVQKALDTVVQNRTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHD 684
            |:||:|||||||||..||..|||||:...|.|||:|:||||||||||..|:|:.:|.:||.|.||
 Worm   538 PKILLLDEATSALDNESEQVVQKALENASQGRTTIVVAHRLSTIRNASKIIVMQKGEIVEVGNHD 602

  Fly   685 ELMGKRGLYFELVRQQ--ERRDIQEQV 709
            ||:.|||:|.:||:.|  |..|..|::
 Worm   603 ELIAKRGVYNDLVQAQLLESHDDHEEL 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 205/602 (34%)
ABC_membrane 137..415 CDD:279056 58/298 (19%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 132/237 (56%)
pgp-7NP_001361833.1 MdlB 42..621 CDD:224055 205/602 (34%)
ABC_MTABC3_MDL1_MDL2 381..618 CDD:213216 132/237 (56%)
ABC_6TM_Pgp_ABCB1_D2_like 686..994 CDD:350022
TM helix 1 695..718 CDD:350022
TM helix 2 733..781 CDD:350022
TM helix 3 790..835 CDD:350022
TM helix 4 836..885 CDD:350022
TM helix 5 897..947 CDD:350022
TM helix 6 956..989 CDD:350022
P-loop_NTPase 1019..>1143 CDD:393306
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.