DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1824 and pgp-10

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_509205.2 Gene:pgp-10 / 180981 WormBaseID:WBGene00004004 Length:1382 Species:Caenorhabditis elegans


Alignment Length:640 Identity:189/640 - (29%)
Similarity:314/640 - (49%) Gaps:79/640 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LWTYLEPHLWELIGAVCAALIVAYINIRIPNLLGDLVNTLARYANTYVMDPINNSFVKDVSKPA- 185
            |.:.|.|.:|.::|...:..|     :|....|| |.|..:.|       ||::.|....: || 
 Worm   106 LQSALPPFVWLIMGNFVSISI-----LREEGKLG-LKNLTSDY-------PIDDQFAHSAT-PAF 156

  Fly   186 -SNL-LSLYMLQSGFTFMYIYLLSRVGEQMAAKMRQDLFTQIVVQDIAFFDENRTGELVNRLTAD 248
             |.| ||:.|..:.|.....:.:|.:  :...::::....::::.||::.:..::|    .:.|.
 Worm   157 ISMLGLSIAMFIAAFCQRIAWEISSI--RQVFRIKKAYIRKLLLMDISWLESRQSG----HVAAM 215

  Fly   249 VQDFKTSFKQFVSQGLRSAAQL-------------IGGSISLFMISPHMAAIALASVPCVVMFMT 300
            :|:...|....:|..|.....:             |...::|||         ..::|.:::...
 Worm   216 LQESADSIYNGISDHLPMVVFILSYLLVNIGVCLYIQWDVTLFM---------CLAIPLLIISRI 271

  Fly   301 YLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAETNEAARLAQKLGYGI 365
            ...|...:..:.......:.|.:..|..:.|.||.|.|.:.:::..||..:.|.::|.::.....
 Worm   272 LYSKWFANTMEEETKLQNKITNLVNETFNCITTVISFAAQKQKINKFEKLSAEHSKLTEERLRSS 336

  Fly   366 AIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGALMAFLVASQGVQRSLAQGSILLGTMIRGMS 430
            .:|..||...|..|:.:.....| :......|||.|.|..:.    ...:...||.:|..:.|.:
 Worm   337 VVFDSLTQILLTELIFTGALCYG-IWRVADNSPGRLCALAIN----MLYMCVTSISIGFHMNGAT 396

  Fly   431 A----GSRVFEFLSLQPQVELLRGYI------IPQERL-----------HGEIRFENVSFAYPMQ 474
            .    ...:.|.|:.||::|:....|      :|..|.           .|.:.|.::.|:||.:
 Worm   397 RAKDNAKEICEVLNEQPKIEVELASIDNNIDYVPVTRCKYRRQSMKFMGKGALHFRDIHFSYPSR 461

  Fly   475 PDHLVLKDFSLTLRPGQTVALVGASGSGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSN 539
            .:..||:..|..:..|:.:|:||:|||||||:.:|:.|||:|:.|.|.|||..:..:.|..||..
 Worm   462 KETEVLRGISFKVEAGEKIAIVGSSGSGKSTLTALLLRFYDPTKGAILLDGENIKTMCPDDLRGQ 526

  Fly   540 VLGFIEQQPVLFGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGTQLSG 604
             ...:.|:||||..:|.:|||||:.||.::::..|||...:..|:.:||||..|.|||||.||||
 Worm   527 -CSLVSQEPVLFDGTISDNIRYGRLDATQQEINDAARKVGAWKFINSLPDGMQTRVGERGHQLSG 590

  Fly   605 GQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQNRTTLVIAHRLSTIRNADLI 669
            ||:||:|||||:::.|.:||.||||||||...|.||..|:|...:..||:.||||||||:|:|.|
 Worm   591 GQKQRVAIARAVIRKPIVLIFDEATSALDNIHEEEVNAAIDLASEGLTTITIAHRLSTIKNSDRI 655

  Fly   670 VVLDQGRVVETGKHDELMG-KRGLYFELVRQQERRDIQEQVQAVEDVVAVKEQQA 723
            :||.:|::||.|..|||:. ..|::.::...|....:.:|.|.:.      :|||
 Worm   656 IVLHEGKIVEEGVPDELIADANGIFHKMYNDQRLDQLTQQHQQLH------QQQA 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 183/616 (30%)
ABC_membrane 137..415 CDD:279056 55/293 (19%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 110/238 (46%)
pgp-10NP_509205.2 MdlB 73..687 CDD:224055 183/615 (30%)
ABC_membrane 156..381 CDD:294371 43/244 (18%)
ABC_MTABC3_MDL1_MDL2 450..687 CDD:213216 110/237 (46%)
ABC_membrane 823..1099 CDD:294371
MdlB 825..1382 CDD:224055
P-loop_NTPase 1141..1381 CDD:304359
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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