DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1824 and abcb4

DIOPT Version :9

Sequence 1:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001303643.1 Gene:abcb4 / 100136865 ZFINID:ZDB-GENE-080204-52 Length:1275 Species:Danio rerio


Alignment Length:678 Identity:225/678 - (33%)
Similarity:352/678 - (51%) Gaps:65/678 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 SRLAIR--KEEEEEDTASEQHFDWKRLWTYLEPHLWELIGAVCAALIVAYINIRIPNLLGDLVNT 160
            |:|.:.  |:||..|.:.|::...::    .|....|::|.:........|:|.: .:|| |:.:
Zfish     5 SKLKVSSDKKEENGDVSGEKNGKEEK----EEKEKLEMVGPIELFRYADSIDILL-MMLG-LIMS 63

  Fly   161 LARYA----NTYVMDPINNSFV--------KDVSKP-------ASNLL--------SLYMLQSGF 198
            :|..|    ...|...:.:|||        |:::.|       .||:.        ::|....||
Zfish    64 MANGAVLPLMVIVFGDMTDSFVDDTLLDNLKNITLPPNFTFPETSNITLGEKMTTHAIYYSIMGF 128

  Fly   199 -----TFMYIYLLSRVGEQMAAKMRQDLFTQIVVQDIAFFDENRTGELVNRLTADVQDFKTSFKQ 258
                 .:|.:...:....:...|:|:..|..|:.|:|.:||.|.||:|..|||.||.........
Zfish   129 VVLVAAYMQVAFWTLAAGRQVKKLRKIFFHSIMKQEIGWFDVNETGQLNTRLTDDVYKINEGIGD 193

  Fly   259 FVSQGLRSAAQLIGGSISLFMISPHMAAIALASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGV 323
            .:...:::....|.|.|..|.....:..:.||..|.:.:....:||.:.:.:...|....:|..|
Zfish   194 KLGMLIQNLTTFIVGIIIGFAKGWKLTLVILAVSPLLGISAAVIGKVMTTFTSKEQTAYAKAGAV 258

  Fly   324 CEEALSNIRTVRSSACEYREMQLFEAETNEAARLAQKLGYGIAIFQGLTNFFLNTLVL------S 382
            .||.||:||||.:...:.:|::.:.....:|..:..:....:.|..|.|.|.:.....      |
Zfish   259 AEEVLSSIRTVFAFGGQKKEIKRYHKNLEDAKNVGVRKAITVNIAMGFTFFMIYMSYALAFWYGS 323

  Fly   383 TLFMGGHLMSTESLSPGALMAFLVASQGVQRSLAQGSILLGTMIRGMSAGSRVFEFLSLQPQVEL 447
            ||.:||..  |..:......|.|:.:.|    |.|.|..:.|......|..:||:.:..:|::..
Zfish   324 TLILGGEY--TIGMLLTIFFAVLIGAFG----LGQTSPNIQTFSSARGAAHKVFQIIDHEPKINS 382

  Fly   448 L--RGYIIPQERLHGEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASGSGKSTIASLV 510
            .  .||.:  :.:.|.|.|:|:.|.||.:.|..||...:|.:..|||:||||:||.||||...|:
Zfish   383 FSEEGYKL--DVVKGNIEFKNIHFRYPSRDDVKVLNGMNLKVMSGQTIALVGSSGCGKSTTIQLL 445

  Fly   511 ERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFIEQQPVLFGTSILENIRYGKPDAGEEDVYAAA 575
            :|||:|..|::.:||:.:..::...|| .::|.:.|:||||.|:|.||||||:.|..::::..||
Zfish   446 QRFYDPQEGSVSIDGHDIRSLNVRGLR-ELIGVVSQEPVLFATTIAENIRYGRQDVTQDEIEQAA 509

  Fly   576 RLSQSHDFVTALPDGYATHVGERGTQLSGGQRQRIAIARALLKNPRILILDEATSALDATSEAEV 640
            |.:.:::|:..|||.:.|.||:||||:||||:|||||||||::||:||:||||||||||.||..|
Zfish   510 REANAYNFIMKLPDKFETLVGDRGTQMSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIV 574

  Fly   641 QKALDTVVQNRTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELVRQQERRDI 705
            |.|||.|...|||:|:|||||||||||:|.....|.:||.|.|||||.::|:|..||..|..:..
Zfish   575 QAALDKVRLGRTTIVVAHRLSTIRNADVIAGFQNGEIVELGTHDELMERKGIYHSLVNMQMFKST 639

  Fly   706 QEQVQAVEDVVAVKEQQATATETSTAAT 733
            :   .|.||     .::.|..|.|.:.:
Zfish   640 E---VAEED-----SEEMTMDEKSPSVS 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1824NP_572810.1 MdlB 119..701 CDD:224055 211/621 (34%)
ABC_membrane 137..415 CDD:279056 71/315 (23%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 126/237 (53%)
abcb4NP_001303643.1 PTZ00265 55..1266 CDD:240339 213/624 (34%)
ABC_membrane 60..348 CDD:279056 66/289 (23%)
ABC_MTABC3_MDL1_MDL2 397..634 CDD:213216 126/237 (53%)
ABC_membrane 714..984 CDD:279056
ABC_MTABC3_MDL1_MDL2 1035..1272 CDD:213216
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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