DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and AT1G53420

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_175747.2 Gene:AT1G53420 / 841777 AraportID:AT1G53420 Length:953 Species:Arabidopsis thaliana


Alignment Length:401 Identity:88/401 - (21%)
Similarity:161/401 - (40%) Gaps:107/401 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 QRIFRATDLVI-----------------GEKLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQ 440
            ::.|::.:|:|                 ..::|||.||.|:| .....|.::.:|:|....::..
plant   599 EKDFKSLELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYK-GKLFDGTIIAVKQLSTGSKQGN 662

  Fly   441 RNFIKEVAVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQV---LPWPQRVRL 502
            |.|:.|:.::..|.|.:::|..|...:..:|.:|.|:|....|...:..|.:.   |.||.|.::
plant   663 REFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKI 727

  Fly   503 ARDIACGMSYLHS---MNIIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSGNMTPGGYGS 564
            ...:|.|::|||.   :.|:|||:.:.|.|:.:..:..::|||||:..:...........|.:| 
plant   728 CIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFG- 791

  Fly   565 GANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPE-MMKGLKYDEKVDVFSFGIMLCEII-- 626
                                             :|||| .|:| ...:|.||:||||:..||:  
plant   792 ---------------------------------YMAPEYAMRG-HLTDKADVYSFGIVALEIVHG 822

  Fly   627 --GRVEADPDFMPRNSDFSLNQ--QEFREK-FCAQCPEP-------------FVKVAFVCCDLNP 673
              .::|..     :|:.|.|..  :..||| ...:..:|             .:::|.:|....|
plant   823 RSNKIERS-----KNNTFYLIDWVEVLREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCTSSEP 882

  Fly   674 DMRPCFETLHVWLQRLADDLAADRVPPERL-----------LHEIETFQEWYASSEDALSPT--- 724
            ..||....:...|:      ....|..|:|           |..:.|.:::|......:|.:   
plant   883 CERPSMSEVVKMLE------GKKMVEVEKLEEASVHRETKRLENMNTMKKYYEMIGQEISTSMSM 941

  Fly   725 --SQRSLNNLD 733
              |.||.::.|
plant   942 IMSDRSESSAD 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492
STKc_LIMK 407..693 CDD:271056 74/312 (24%)
AT1G53420NP_175747.2 leucine-rich repeat 89..110 CDD:275380
leucine-rich repeat 112..135 CDD:275380
leucine-rich repeat 136..159 CDD:275380
leucine-rich repeat 160..183 CDD:275380
leucine-rich repeat 184..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
leucine-rich repeat 232..255 CDD:275380
leucine-rich repeat 256..279 CDD:275380
leucine-rich repeat 280..301 CDD:275380
leucine-rich repeat 304..325 CDD:275380
leucine-rich repeat 327..345 CDD:275380
Malectin 366..548 CDD:288557
STKc_IRAK 630..897 CDD:270968 74/313 (24%)
TyrKc 630..895 CDD:197581 73/305 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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