DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and AT5G56460

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_200457.1 Gene:AT5G56460 / 835747 AraportID:AT5G56460 Length:408 Species:Arabidopsis thaliana


Alignment Length:458 Identity:104/458 - (22%)
Similarity:182/458 - (39%) Gaps:102/458 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 RQATNASTTIPPAAGATAMTQ-LKEKERCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQK 391
            |.:.||.:..|.....|...: :||.::..|..|   |....::.||...|...:..:...:...
plant    14 RVSANAKSESPKEQSPTVEDKHIKEVQKLPSNPK---EVEDLRRDSAANPLIAFTYEELKNITSN 75

  Fly   392 PQRIFRATDLVIGEKLGEGFFGKVFKVTHRQS-GE------VMVLKELHRADEEAQ--RNFIKEV 447
                || .|.|    ||.|.||.|:|...::. |:      :.|..::|..|...|  |.::.||
plant    76 ----FR-QDRV----LGGGGFGSVYKGFIKEDLGDQEVPEPLPVAVKVHDGDNSFQGHREWLAEV 131

  Fly   448 AVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQV-LPWPQRVRLARDIACGMS 511
            ..|..|.|.:::|.||...:|....::.||:|.|.::..:.....: |.|..|:::|...|.|::
plant   132 IFLGQLSHPNLVKLIGYCCEDNHRVLIYEYMARGSVENNLFSRVLLPLSWAIRMKIAFGAAKGLA 196

  Fly   512 YLHSMN--IIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSGNMTPGGYGSGANSDAPMSP 574
            :||...  :|:||..:.|.|:..|.:..::|||||:.                          .|
plant   197 FLHEAKKPVIYRDFKTSNILLDMDYNAKLSDFGLAKD--------------------------GP 235

  Fly   575 SGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEII-GRVEADPDFMPR 638
            .|......:|       ::|...:.|||.:.........||:|||::|.|:: ||...|.....|
plant   236 VGDKSHVSTR-------IMGTYGYAAPEYIMTGHLTPGSDVYSFGVVLLELLTGRKSLDKSRPTR 293

  Fly   639 NS---DFSLNQQEFREKFC------AQCPEPFVKV------AFVCCDLNPDMRPCFETLHVWLQR 688
            ..   |::|...:.::|..      ..|..|...|      |:.|.:.||..||....:      
plant   294 EQNLIDWALPLLKEKKKVLNIVDPKMNCEYPVKAVQKAAMLAYHCLNRNPKARPLMRDI------ 352

  Fly   689 LADDLAADRVPPERLLHEIETFQEWYASSEDAL--SPTSQRSLNNLDELVKSAVD--SEISPVEK 749
                              :::.:...|:.|:||  .|..:..:..:||:.|:.:.  .|:..||:
plant   353 ------------------VDSLEPLQATEEEALLVPPVQKAVITIIDEMPKNGLKKVEELKKVEE 399

  Fly   750 EKE 752
            .|:
plant   400 VKK 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492
STKc_LIMK 407..693 CDD:271056 75/313 (24%)
AT5G56460NP_200457.1 PKc_like 82..359 CDD:389743 75/333 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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