DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and AT5G37450

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_001332712.1 Gene:AT5G37450 / 833722 AraportID:AT5G37450 Length:983 Species:Arabidopsis thaliana


Alignment Length:696 Identity:150/696 - (21%)
Similarity:256/696 - (36%) Gaps:167/696 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 YGKRSCQPADAKARITTAGKPMHSIRLVEIPKDATPGLRVD-GVALDDGCPTVRITDLFCNFFLW 211
            ||...|...:|.......|     |..:|:...||....:. |......||...      |:...
plant   375 YGNPVCANVNAGKLADLCG-----ISTLEVESPATSSETISTGDCKRQSCPVSE------NYDYV 428

  Fly   212 LTSMAEQCCGAPYRIDVNLTNLHIGD---------------RILEVNGTPVS-DSSVEQIDKLIR 260
            :.|.....|.||..||:.|.:....|               :.|.:|...:| |:...|....:.
plant   429 IGSPVACFCAAPLGIDLRLRSPSFSDFRPYKVSYMLDVASPKNLGINPYQISIDTFAWQSGPRLF 493

  Fly   261 SNEKMLQLTVEHDPVQVCRSCSQADIQRAM---SASTL----------ILPLSTSA--------- 303
            .|.|:..   |:.  ::....:..::||.:   :..||          |:.::|.|         
plant   494 MNMKIFP---EYS--ELNSKFNSTEVQRIVDFFATFTLNTDDSLGPYEIISINTGAYKDGNTHIF 553

  Fly   304 -SSVEVGRERLYKTPGEQGTKARKLRQATNASTTIPPAAGATAM---------------TQLKEK 352
             ||:.:.|..:|.||..:.|.....:...:...::....||.|.               ::.|.|
plant   554 YSSLCIKRVFIYVTPVYEVTIIFPKKSGMSIGVSVGIIIGAIAFFLVLSSLALVFFIKRSKRKRK 618

  Fly   353 ERCSSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQRIFRATDLVIGEKLGEGFFGKVFK 417
            .|         |....|:|.......::...:.....:........:||   .::|.|.:|||:|
plant   619 TR---------EVDMEQEHPLPKPPMNMESVKGYNFTELDSATSSFSDL---SQIGRGGYGKVYK 671

  Fly   418 VTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDHRHVLKFIGVLYKDKK--LHMVTEYVAG 480
             .|...|.|:.:|...:...:.|:.|..|:.:|..|.||:::..:|  |.|:|  ..:|.||:..
plant   672 -GHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLG--YCDQKGEQMLVYEYMPN 733

  Fly   481 GCLKELIHDP-AQVLPWPQRVRLARDIACGMSYLHS---MNIIHRDLNSMNCLVREDRSVIVADF 541
            |.|::.:... .|.|....|:|:|...|.|:.|||:   ..|||||:...|.|:....:..||||
plant   734 GSLQDALSARFRQPLSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADF 798

  Fly   542 GLARSVDAPRLPSGNMTPGGYGSGANSDAPMSPSGTLRRSKSRQRRQRYTVV-GNPYWMAPEMMK 605
            |:::.:   .|..|.:                           ||....|:| |.|.::.||...
plant   799 GISKLI---ALDGGGV---------------------------QRDHVTTIVKGTPGYVDPEYYL 833

  Fly   606 GLKYDEKVDVFSFGIMLCEII--------GR-------VEADPDFMPRNSDFSLNQQEFREKFCA 655
            ..:..||.||:|.||:..||:        ||       ...|...|....|.|:.|      :..
plant   834 SHRLTEKSDVYSLGIVFLEILTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQ------YSE 892

  Fly   656 QCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVPPERLLHEIETFQEWYASSEDA 720
            :|.:.|:::|..||..||:.||       |:..:..:|       |.:...|...::.|:     
plant   893 ECVKRFMELAIRCCQDNPEARP-------WMLEIVREL-------ENIYGLIPKEEKPYS----- 938

  Fly   721 LSPTSQRSLNNLDELVKSAVDSEISPVEKEKENMVIK---PQDIPK 763
             ||:.|.|.:.:.....::..|..:...:...|.::.   |...|:
plant   939 -SPSVQSSASGMSGFAVASPRSSYTTFSEFTANQLVSGVIPSIAPR 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751 150/696 (22%)
PDZ_signaling 172..271 CDD:238492 23/115 (20%)
STKc_LIMK 407..693 CDD:271056 84/307 (27%)
AT5G37450NP_001332712.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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