DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and AT5G12000

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_196761.2 Gene:AT5G12000 / 831073 AraportID:AT5G12000 Length:701 Species:Arabidopsis thaliana


Alignment Length:499 Identity:108/499 - (21%)
Similarity:198/499 - (39%) Gaps:104/499 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 IDVNLTNLHIGDRILEVNGTPVSDSSVEQIDKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAM 290
            ||::..|..:      |.|:..||.|..|..:.|.:..|.|::.::........:|.:|      
plant   264 IDLSAENFDM------VGGSGSSDESASQSTRDIEAEMKRLKIELKQTMDMYSSACKEA------ 316

  Fly   291 SASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLRQATNASTTIPPAAGATAMTQLKEKERC 355
                    |:....:.|:.:.::     |:..:..:.|.|..|:..:.....|.....|:..|:.
plant   317 --------LNAKKKANELNQWKM-----EEARRFEEARNAEEAALAVAEMEKAKCRAALEAAEKA 368

  Fly   356 SSLSKLLDEQHQAQQHSAHPQLYDLSRTQSCRVVQKPQR--------IFRATD-LVIGEKLGEGF 411
            ..:::|..::.:..:..|..:..:..|..|. :||...|        |..||: .....|:|||.
plant   369 QRMAELEGQRRKQAEMKARRESQEKDRALSA-LVQNDVRYRKYSIDEIEVATERFANNRKIGEGG 432

  Fly   412 FGKVFKVT--HRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDHRHVLKFIGVLYKDKKLHMV 474
            :|.|:..|  |..    :.:|.|.....:.::.|.:||.||..:.|.|::..:|...:...|  |
plant   433 YGPVYHGTLDHTP----VAIKVLRPDAAQGKKQFQQEVEVLSSIRHPHMVLLLGACPEYGCL--V 491

  Fly   475 TEYVAGGCLKELI----HDPAQVLPWPQRVRLARDIACGMSYLHSMN---IIHRDLNSMNCLVRE 532
            .|::..|.|::.:    :.|.  |.|.:|.::|.:||..:|:||...   ::||||...|.|:.:
plant   492 YEFMDNGSLEDRLFRRGNSPP--LSWRKRFQIAAEIATALSFLHQAKPEPLVHRDLKPANILLDK 554

  Fly   533 DRSVIVADFGLARSVDAPRLPSGNMTPGGYGSGANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPY 597
            :....::|.||||.|                       |.|.:.|:      .:....:..|...
plant   555 NYVSKISDVGLARLV-----------------------PASVANTV------TQYHMTSAAGTFC 590

  Fly   598 WMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQEFREKFCAQCPE--- 659
            ::.||..:..|...|.|:||.||||.:||  ....|..:..:...::::..|::......|:   
plant   591 YIDPEYQQTGKLTTKSDIFSLGIMLLQII--TAKSPMGLAHHVSRAIDKGTFKDMLDPVVPDWPV 653

  Fly   660 ----PFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVP 699
                .|.|:...|.:|....||              ||..:.||
plant   654 EEALNFAKLCLRCAELRKRDRP--------------DLGKEIVP 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492 12/44 (27%)
STKc_LIMK 407..693 CDD:271056 70/301 (23%)
AT5G12000NP_196761.2 STK_N 16..154 CDD:238947
Pkinase 422..675 CDD:278497 69/291 (24%)
STKc_IRAK 428..688 CDD:270968 74/309 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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