DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and AT2G19410

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_001323703.1 Gene:AT2G19410 / 816460 AraportID:AT2G19410 Length:822 Species:Arabidopsis thaliana


Alignment Length:606 Identity:128/606 - (21%)
Similarity:230/606 - (37%) Gaps:196/606 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 DKLIRSNEKMLQLTVEH--DPVQVCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPG 318
            ::|..:..|:..|:.|:  :..:|..:..:.::||..:|               :.:||..|...
plant   355 EELFSTQNKVKMLSTEYLNESKRVNNAVEKEELQRNTAA---------------LEKERYMKAVK 404

  Fly   319 EQGT-KARKLRQATNASTTIPPAAGATAMTQLKEKERCSSLSKLLDEQHQAQQHSAHPQLYDLSR 382
            |..| ||...|:.....     .|...|:....||::.  :.:||...|:.::::.         
plant   405 EVETAKALLAREFCQRQ-----IAEVNALRTYLEKKKV--IDQLLGTDHRYRKYTI--------- 453

  Fly   383 TQSCRVVQKPQRIFRATDLVIGEK-LGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKE 446
                      :.|..||:....|| :|||.:|||::.:  .......:|.:.....|.::.|:||
plant   454 ----------EEIVTATEGFSPEKVIGEGGYGKVYQCS--LDSTPAAVKVVRLDTPEKKQEFLKE 506

  Fly   447 VAVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELI----HDPAQVLPWPQRVRLARDIA 507
            |.||..|.|.||:..:|...::..|  |.||:..|.|:|.|    :.|.  |||..|.|:..::|
plant   507 VEVLSQLRHPHVVLLLGACPENGCL--VYEYLENGSLEEYIFHRKNKPP--LPWFIRFRVIFEVA 567

  Fly   508 CGMSYLHSMN---IIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSGNMTPGGYGSGANSD 569
            ||:::|||..   |:||||...|.|:..:....:||.|||:.|.       ::.|.......|| 
plant   568 CGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVT-------DVAPDNVTMYRNS- 624

  Fly   570 APMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEII------GR 628
                                 .:.|..:::.||..:......|.|:::|||::.:::      |.
plant   625 ---------------------VLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGI 668

  Fly   629 VEADPDFMPRN----------SDFSLNQQEFREKFCAQCPEPFVKVAFVCCDLNPDMRPCFETLH 683
            |.|..:.:.:.          :|:.|.:.|...:...:|.|      |.|.|     ||      
plant   669 VPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAE------FRCRD-----RP------ 716

  Fly   684 VWLQRLADDLAADRVPPERLLHEIETFQEWYASSEDALSPTSQRSLNNLDELVKSAVDSEISPVE 748
                    ||.::.:|                                   ::|..|::..|.|:
plant   717 --------DLKSEVIP-----------------------------------VLKRLVETANSKVK 738

  Fly   749 KEKENM---------VIKPQDIPKSPHLGKD-FSPSGERLRDSMRARRRQRFLGAQEERRNLTPD 803
            ||..|:         :::  :|.:.|.:..| |:            ..|:..| |..|:.|::|.
plant   739 KEGSNLRAPSHYFCPILR--EIMEEPEIAADGFT------------YERKAIL-AWLEKHNISPV 788

  Fly   804 TESK--------ERALKKALK 816
            |..|        ...|:.|::
plant   789 TRQKLDHFKLTPNHTLRSAIR 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492 3/14 (21%)
STKc_LIMK 407..693 CDD:271056 76/308 (25%)
AT2G19410NP_001323703.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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