DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LIMK1 and tesk2

DIOPT Version :10

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:XP_012816769.2 Gene:tesk2 / 779799 XenbaseID:XB-GENE-954759 Length:664 Species:Xenopus tropicalis


Alignment Length:747 Identity:208/747 - (27%)
Similarity:317/747 - (42%) Gaps:211/747 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 RIFRATDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLKELHRADEEAQRNFIKEVAVLRLLDHRHV 458
            |:.|..|... ||:|.|||.:||||.||.|.:||.||....:...|  |.:|||.::..|.|.::
 Frog    48 RLTRLDDFTC-EKIGSGFFSEVFKVRHRTSDQVMALKMNKLSSNRA--NMLKEVQLMNRLSHPNI 109

  Fly   459 LKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQVLPWPQRVRLARDIACGMSYLHSMNIIHRDL 523
            |:|:||.....:||.:|||:..|.|::|: |..|.|.|..||:||.|||.|::||||..|.||||
 Frog   110 LRFMGVCVHQGQLHALTEYINSGNLEQLL-DSNQHLTWTVRVKLALDIALGLAYLHSKGIFHRDL 173

  Fly   524 NSMNCLVREDR---SVIVADFGLARSVDAPRLPSGNMTPGGYGSGANSDAPMSPSGTLRRSKSRQ 585
            .|.|||::.|.   |.:|||||||.     ::|.       |..|:                   
 Frog   174 TSKNCLIKSDESGYSAVVADFGLAE-----KIPD-------YSEGS------------------- 207

  Fly   586 RRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRVEADPDFMPRNSDFSLNQQEFR 650
              ::..|||:|||||||:::...||||.||||:||:|||||.|::||||::||..:|.|:...| 
 Frog   208 --EKLAVVGSPYWMAPEVLRDEPYDEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDGF- 269

  Fly   651 EKFCAQCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDLAADRVPPERLLHEIETFQEWYA 715
            :.....||..|:::.|.||:::|.:||.|..:...|:.:.:.|..:....||             
 Frog   270 QHMVGDCPPDFLQLTFNCCNMDPKLRPSFIDIAKQLENILNRLRNEEAERER------------- 321

  Fly   716 SSEDALSPTSQRSLNNLDELVKSAVDSEISPVEKEKENMVIKPQD--IP-KSPHLGKDFSPSGER 777
                     ...|.||::....|.........:..|..:.:.|||  || |||...::.:.|  |
 Frog   322 ---------KDLSENNIEPKPISLAKGPNDKCQGVKRLISMVPQDDKIPQKSPRPRRNITLS--R 375

  Fly   778 LRDSMRARRRQRFLGAQEERRNLTPDTESKERALKKALKKCRPFGERGYLVDLRAGAELQLEDVR 842
            .:..:.||:..|.:..|:.  ..||.        |.|::|..||..|              ||::
 Frog   376 SQSDIFARKPLRKVNVQDP--FYTPS--------KGAVRKVNPFSAR--------------EDLK 416

  Fly   843 DLNTYSDVDSSCDTSLNYHDVNNLPAAQEDENTVKPGKEELLEESTNKPSNQESQHHRLAIDDM- 906
            ....:.|:.|....| :..|:::            |.::..|...|:      .|..:|...|: 
 Frog   417 GRIKFFDMPSKSVIS-HVFDLHS------------PKRDGSLAAGTS------GQIRQLLSQDIV 462

  Fly   907 ------RTRLNQCRS----------------------KFEHLE---EASRRNFNQSQHSMKNFFK 940
                  |.|   |||                      ||:..:   |..::..:..::|:::.  
 Frog   463 DFSIIPRRR---CRSLPVSPELLRKDCTSSGLSCTVGKFDPAQLGSEVRQKLLSSVKYSVQDI-- 522

  Fly   941 TPPVALKMFQRLE--------HEAAALNGGNN-CPPPPPRTQR-----INQTPIFGRKNPPVAIV 991
             ||...:..:.|:        .:|......|. |   |.||:.     .||..:..:|:   |..
 Frog   523 -PPFRPRSPEYLQANDEDMDCTDATFTQEANGFC---PGRTENKVQAYYNQLLVSNKKH---AHC 580

  Fly   992 GQKLQHAESLE----DLASSGVAKQLATPAPKRSKATATTKGGQSSNPPLFLPPSLNISVALNSN 1052
            .||..::.|.|    ||.||..|.::....                        |.|:|.||:::
 Frog   581 SQKSLNSYSEEENSFDLFSSSEAMEIEEET------------------------SQNLSTALSAS 621

  Fly  1053 ----------GNVT----TTTNTNSSCPPSAS 1070
                      |.||    ..|..:|...||.|
 Frog   622 SISFSSPTRVGGVTLLPLENTVADSKDSPSLS 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_LIMK-like 169..274 CDD:467236
STKc_LIMK 407..693 CDD:271056 117/288 (41%)
tesk2XP_012816769.2 PKc_TESK 60..312 CDD:271057 117/288 (41%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.