DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and map3k10

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:XP_689424.4 Gene:map3k10 / 560932 ZFINID:ZDB-GENE-050419-112 Length:1062 Species:Danio rerio


Alignment Length:1141 Identity:246/1141 - (21%)
Similarity:405/1141 - (35%) Gaps:331/1141 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 CRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLRQATNASTTIPPAA- 341
            |......|.|...:::..::.:::|.:|..:        |...|:....|.....:|.|...|. 
Zfish    30 CGHLVPPDTQANTNSTPFLISINSSRNSSTI--------PSSVGSPDSHLPHHHESSNTYWTAVF 86

  Fly   342 --GATAMTQLKEK-----ERCSSLSKLLDEQ-----------------HQAQQHSAHPQLYDLSR 382
              .|||..:|..:     |..|..||:..::                 :..|:.|::|.|     
Zfish    87 DYEATADEELTLRRGDLLEVLSKDSKVSGDEGWWTGKIQDKVGIFPCNYVTQRDSSYPAL----- 146

  Fly   383 TQSCRVVQKPQRIFRA--------TDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLKELHRADEE- 438
                    .|:.:...        .:|.:.|.:|.|.||||:|...| :.||.|.......||: 
Zfish   147 --------PPEALVGGDSPLEIDFLELRLEEVIGAGGFGKVYKGVWR-AEEVAVKAARQDPDEDI 202

  Fly   439 --AQRNFIKEVAVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHD---PAQVLPWPQ 498
              ...|..:|..:..:|.||:::...||..::..|.:|.||..||.|...:..   |.:||    
Zfish   203 SATAENVRQEARLFWMLRHRNIIALRGVCLREPNLCLVMEYARGGALNRALAGKKVPPRVL---- 263

  Fly   499 RVRLARDIACGMSYLHSMN---IIHRDLNSMNCLV-----RED---RSVIVADFGLARSVDAPRL 552
             |..|..||.||.|||:..   ||||||.|.|.|:     |:|   :::.:.||||||.      
Zfish   264 -VNWAVQIATGMDYLHNQTFVPIIHRDLKSSNILILEPVERDDLSGKTLKITDFGLARE------ 321

  Fly   553 PSGNMTPGGYGSGANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFS 617
                         .:....||.:||..                  |||||::|...:.:..||:|
Zfish   322 -------------WHRTTKMSAAGTYA------------------WMAPEVIKLSLFSKSSDVWS 355

  Fly   618 FGIMLCEII-GRVEADPDFMPRNSD-----FSLNQQEFREKFCAQCPEPFVKVAFVCCDLNPDMR 676
            ||::|.|:: |.|..      |..|     :.:...:......:.|||.|.::...|...||..|
Zfish   356 FGVLLWELLTGEVPY------REIDALAVAYGVAMNKLTLPIPSTCPEAFAQLLGECWCPNPRGR 414

  Fly   677 PCFETLHVWLQRLAD---------------DLAAD-RVPPERLLHEIETFQEWYASSEDALSPTS 725
            |.|.::   |:||.|               .|..| |:..:::..|:...::...|.|:||:..:
Zfish   415 PAFGSI---LKRLEDIEQSAMFQMPLESFHSLQEDWRLEIQQMFDELRAKEKELRSWEEALARAA 476

  Fly   726 QRSLNNLDEL---VKSAVDSEISPVEKEKENMVI------KPQ------DIPKSP--HLGKDFS- 772
            :......:.|   .:...:.||..||:|. |::|      |||      :..||.  .||:|.: 
Zfish   477 EEQREQEEHLRRREQELAEREIDIVEREL-NIIIHQMYQEKPQVKKRKGNFKKSRLLKLGRDSNC 540

  Fly   773 ---PSGERLRDSMRAR------------------------RRQRFLGAQEERRNLTPD----TES 806
               |||...:.:::|.                        |.:.|        .|||.    |..
Zfish   541 ISLPSGFEHKITVQASPSVDKRKCQSSESTTPPASPGVIPRLRAF--------RLTPSDGRKTWG 597

  Fly   807 KERALKK----ALKKCRPFGERGYLVDLRAGAELQLEDVRDLNTYSDVDSSCDTS-------LNY 860
            :....||    ..||.|.:|........|.|.|.:|:.:.:...:|....:...|       ..:
Zfish   598 RTAVCKKEEPGTKKKGRTWGPSSTHQRERVGGEDRLKSLGEGKVWSSSAPNLGKSPKHAPMTAGF 662

  Fly   861 HDVNNLPAAQEDENTVKPGK-----------EELLEESTNKPSNQESQHHRLAIDDMRTRLNQ-- 912
            ..:|.:....|.::: .||:           |::...|....|...||       |...|.:|  
Zfish   663 SSLNEMEEHCEFDDS-SPGRLAPDLGSNGALEDVGSGSAGLGSGIGSQ-------DSVCRCSQRK 719

  Fly   913 --------CRSKF------EHLEEASRRNFNQSQHSMKNFFKTPPVALKMFQRLEHEAAALNGG- 962
                    |.|..      ..:.:..|:..||.:..::.           .||.:.|......| 
Zfish   720 KSDLLLLGCASLLAVVGLGSDILQLGRQQMNQDEQDVRE-----------EQRKKKEGLFQRTGR 773

  Fly   963 -NNCPPPPPRTQRINQT---------PIFGRKNPPVAIVGQKLQHAESLEDLASSGVAKQLATPA 1017
             .....||.||..::.:         |... .:|.|.::        ||..|:.....|.|....
Zfish   774 FRRSTSPPSRTLSLSLSHNRHHDSILPSMD-PSPSVTLL--------SLSSLSDCNSTKSLLPSD 829

  Fly  1018 PKRSKATATTKGGQSSNPPLFLP-PSLNISVALNSNGNVTTTTNTNSSCPP---SASDWLPKKHK 1078
            |.....|      .|:.||:..| |:||..:.|.:.   :.....|.|..|   ||:..|.:.|:
Zfish   830 PDDFAPT------PSNAPPVVSPAPALNPLLDLRAE---SFKREPNQSLTPTHVSATMALNRGHR 885

  Fly  1079 LTLP-----LPSAQ----QQRTSSNHRLPMCNNKGKTLKPLPSRTGSQ------GIPASNCVSPT 1128
            .| |     .|.||    .:||.|:..:|.......|:.|.   |||:      .:|..:.:.|:
Zfish   886 RT-PSDGAIRPRAQTVVGHRRTPSDGSMPFPPAHAPTITPY---TGSRETLDIPRLPDPSMMFPS 946

  Fly  1129 ---RSSRPGSPTKHLAQRHTAATAQRLTNAAATHQQQHQQQSSKTTRLNILSPEKVHRLGARLTD 1190
               |...|..||.. ...:|....:..|...|...:.              :|.:......:|:.
Zfish   947 ALRRKPAPPIPTPE-PDSYTGTLERPKTLEFAPRPRP--------------TPARARPDPWKLSS 996

  Fly  1191 QKQKMREEAAATASSVGGAGCAAGTAAGSLNGHRTI 1226
            ..|.:.....::..|..|:| .:|.:||:...|:::
Zfish   997 LSQTLSSSPGSSCDSPLGSG-DSGVSAGTGGVHQSL 1031

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750
LIM2_LIMK 95..148 CDD:188751
PDZ_signaling 172..271 CDD:238492
STKc_LIMK 407..693 CDD:271056 91/323 (28%)
map3k10XP_689424.4 SH3_MLK1-3 81..138 CDD:212992 9/56 (16%)
STYKc 165..424 CDD:214568 90/310 (29%)
STKc_MLK2 170..427 CDD:271050 90/308 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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