DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and limk1b

DIOPT Version :9

Sequence 1:NP_511139.2 Gene:LIMK1 / 32207 FlyBaseID:FBgn0283712 Length:1257 Species:Drosophila melanogaster
Sequence 2:XP_005161503.1 Gene:limk1b / 101883214 ZFINID:ZDB-GENE-110411-106 Length:615 Species:Danio rerio


Alignment Length:669 Identity:267/669 - (39%)
Similarity:370/669 - (55%) Gaps:111/669 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RCSVCEGHLHNWYFEREGLLYCREDYYGRFGDACQQCM-AVITGPVMVAGEHKFHPECFCCTACG 125
            ||..|...|.:||:||:|..:|::.|..||.:.|..|. ::.|||:||||::|:|||||.|.:|.
Zfish    17 RCCECNSVLADWYYERDGQFFCKKHYLSRFAEQCYGCTESINTGPIMVAGKNKYHPECFLCESCD 81

  Fly   126 SFIGEGESYALVERSKLYCGQC-YGKRSCQPADAKARITTAGKPM-HSIRLVEIPKDA--TPGLR 186
            .|||:|:|:|||:.:.|||||| |.|.|.|...||      |.|: |.:..:..|..|  ..|| 
Zfish    82 VFIGDGDSFALVDYTNLYCGQCHYQKVSTQHLAAK------GSPLPHMVTSMSFPPSAESRQGL- 139

  Fly   187 VDGVALDDGCPTVRITDLFCNFFLWLTSMAEQCCGAPYRIDV-NLTN-----LHIGDRILEVNGT 245
                                  |..:....::......::|: ||:.     :|:||||||:||.
Zfish   140 ----------------------FFTVEKKDKEHLVTVSQLDLHNLSAEVKPLIHVGDRILEINGI 182

  Fly   246 PVSDSSVEQIDKLIRSNEKMLQLTVEHDPVQVCRSCSQADIQRAMSASTLILPLSTSASSVEVGR 310
            .|.:..:.:|:.:|...|..||:|:||:|..   ...|.|:                  |..:|.
Zfish   183 SVHNIPLNEINLVIHDTEHWLQITIEHNPKD---HIKQEDL------------------SGLLGE 226

  Fly   311 ERLYKTPGEQG-TKARKLRQATNASTTIPPAAGATAMTQLKEKERCSSLSKLLDEQHQAQQHSA- 373
            |  ...||..| ......||.::.|..|              ...||     :|:....|:|:| 
Zfish   227 E--LDQPGNLGFFPLPNNRQISHRSKNI--------------LRSCS-----IDKVPCLQRHAAL 270

  Fly   374 --HPQLYDLSRTQSCR--VVQKPQRIFRATDLVIGEKLGEGFFGKVFKVTHRQSGEVMVLKELHR 434
              |.:  |::|::|.|  ...|.|||||.:||:.||.||:|.||:..||||.::|||||:|||.:
Zfish   271 LSHRR--DINRSESLRFDANDKTQRIFRPSDLIYGEILGKGCFGQAIKVTHLETGEVMVIKELLQ 333

  Fly   435 ADEEAQRNFIKEVAVLRLLDHRHVLKFIGVLYKDKKLHMVTEYVAGGCLKELIHDPAQVLPWPQR 499
            .|||.|:.|:|||.|:|.|:|.:||||||:|||||:|::::|||.||.|::.|...|...||..|
Zfish   334 FDEETQKTFLKEVKVMRCLEHPNVLKFIGILYKDKRLNLISEYVQGGTLRDTILKMASDHPWNLR 398

  Fly   500 VRLARDIACGMSYLHSMNIIHRDLNSMNCLVREDRSVIVADFGLARSVDAPRLPSGNMTPGGYGS 564
            |..|:|||.||:||||||:|||||||.||.|||:::|:|||||||:.|                 
Zfish   399 VSYAKDIAAGMAYLHSMNVIHRDLNSHNCFVRENQTVVVADFGLAQLV----------------- 446

  Fly   565 GANSDAPMSPSGTLRRSKSRQRRQRYTVVGNPYWMAPEMMKGLKYDEKVDVFSFGIMLCEIIGRV 629
               .|...|..|.:.:.....|::|||||||||||||||:.|..|||:||:|||||:||||||||
Zfish   447 ---KDEKTSSPGQMSKLNKLGRKKRYTVVGNPYWMAPEMINGKIYDERVDIFSFGIVLCEIIGRV 508

  Fly   630 EADPDFMPRNSDFSLNQQEFREK-FCAQCPEPFVKVAFVCCDLNPDMRPCFETLHVWLQRLADDL 693
            .|||||:||..::.||.:||.|: :...||..|..:|.:||.|..:.||.|..|..||:.:...|
Zfish   509 YADPDFLPRTQEYGLNVKEFLERCWSKDCPAAFFPIAVLCCALEAEKRPVFAKLEEWLENVMMHL 573

  Fly   694 AADRVPPERLLHEIETFQE 712
            .........||...::|.|
Zfish   574 EMGLPLMSELLKVRQSFWE 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_511139.2 LIM1_LIMK 33..88 CDD:188750 10/25 (40%)
LIM2_LIMK 95..148 CDD:188751 31/54 (57%)
PDZ_signaling 172..271 CDD:238492 24/106 (23%)
STKc_LIMK 407..693 CDD:271056 149/286 (52%)
limk1bXP_005161503.1 LIM <17..42 CDD:295319 10/24 (42%)
LIM2_LIMK 50..104 CDD:188751 30/53 (57%)
TyrKc 303..566 CDD:197581 149/282 (53%)
PKc_like 306..573 CDD:304357 149/286 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 316 1.000 Domainoid score I1247
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 515 1.000 Inparanoid score I1254
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119463at33208
OrthoFinder 1 1.000 - - FOG0003618
OrthoInspector 1 1.000 - - otm24750
orthoMCL 1 0.900 - - OOG6_103981
Panther 1 1.100 - - O PTHR46485
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2495
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.930

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