DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pits and myt1b

DIOPT Version :9

Sequence 1:NP_001138192.1 Gene:Pits / 32205 FlyBaseID:FBgn0030400 Length:630 Species:Drosophila melanogaster
Sequence 2:XP_017209183.1 Gene:myt1b / 100536821 ZFINID:ZDB-GENE-090313-67 Length:1205 Species:Danio rerio


Alignment Length:719 Identity:139/719 - (19%)
Similarity:206/719 - (28%) Gaps:291/719 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 GSLSSLGNAVAAAAAAAAVH-------HHHQMPYQMPVPRIGPPLDYPVKLEDAPGGGVRPVRIS 181
            |:|..|..|:|..|.....|       .||:.                ..|:|..|..:..:|.|
Zfish   435 GNLGLLEQAIALKAQQVKAHRGLSRIPEHHRF----------------FALDDRAGKHMEHIRKS 483

  Fly   182 -------------------------HMT---PHHLPPNATRGGGGAPGGGVPTAGSGGGSLPP-- 216
                                     |:|   |||      |...|.|         ....:||  
Zfish   484 CFVKESSRSEKREIKCPTPGCDGTGHVTGLYPHH------RSLSGCP---------HKDRIPPEI 533

  Fly   217 -ALSVNLKRPPSEDVDVDVSQQQQQSGHGLAPDGSAGNSLSAGGGVSGGCP--PGIKRSAMDD-- 276
             |:..|:.:.|:.               |....|...::.:....:| |||  ...|.|...|  
Zfish   534 LAMHENVLKCPTP---------------GCTGQGHVNSNRNTHRSLS-GCPIAAAEKLSKSHDKQ 582

  Fly   277 ----PSG--VGGRPPLTR----------------GESLPAAVSYVPERQLSGLRDKQQPVRAPSF 319
                |.|  :.|.|...|                |...|:.|...|...|:...:|...|   ||
Zfish   583 HLPQPMGEHIKGSPNSDRVLRPMCFVKQLEIPPHGSYRPSLVPATPRANLAKELEKYSKV---SF 644

  Fly   320 DASTFKAANPIPNPIPHHLHIAEHMSPASRRNGSSPP----SGPLPPRSVHSPNSSGSSSG---R 377
            |.::|.........:...:|.:| .||.:.:  |.||    |.|.|  |:|......||||   .
Zfish   645 DYASFDVQVFGKRMLAPKMHTSE-TSPKAFK--SKPPFPRVSPPSP--SLHGVYGKSSSSGYDYS 704

  Fly   378 RSSGSRHVSSTTV--------------------TSSEVGGSNPGQAVVAGGLGGGGGGGPGSNAA 422
            ..:.:.|:::|.:                    .|.|:.....|...::                
Zfish   705 HDAEAAHMAATAILNLSTRCWERPENLSIRHQDKSMEIEVDENGTLDLS---------------- 753

  Fly   423 SGQLGGPSGGSGQLSCTS---GGPGGSASSGSG------GNGAIGPASM---------------- 462
               :..|......:||||   ..|..|:||.|.      ||.:|.|.|:                
Zfish   754 ---MKKPIKREVGMSCTSPEVRSPDLSSSSSSSSTSLHHGNSSISPHSLHTYKQEEWEGPLDYTK 815

  Fly   463 ---------------APNSVAGDGS--------------PAGGNGPS-------GSNGSGGSVNP 491
                           ||:..:.|..              |.....||       ..|.....:.|
Zfish   816 PNRQREEELEEMDHSAPSFASSDPEDCDMMQDGLEDRKYPGEVTTPSFKVRFQPKDNKKDLLMCP 880

  Fly   492 GPGSSGSQGGGG--------GGTPLASGG-----------------GSAGSGGLGGAPGSSAASN 531
            .||..||....|        .|.|||...                 |..|||.:.|     ..|:
Zfish   881 TPGCDGSGHITGNYASHRSLSGCPLADKSLRSLMAAHTAELKCPTPGCDGSGHITG-----NYSS 940

  Fly   532 SAAAAAAAAAQNATLKCTLCQERLEDTHFVQCP-----SVNH-------HKFCFPCSRESIKRQN 584
            ..:.:....|:...:|.|..::..||:..::||     |:.|       |:..:.|...:.:::.
Zfish   941 HRSLSGCPRAKKGGIKTTPIKDDKEDSELLKCPVPGCDSLGHISGKYATHRSAYGCPLAARRQKE 1005

  Fly   585 GLGN------EVYCPSGDRCPL--------AN---------SVIPWAFMQGEITTILGEEVKVKK 626
            ||.|      :.:...|..||.        ||         |..|.|.:..:.....|||....|
Zfish  1006 GLLNGSPFSWKAFKTEGPTCPTPGCDGSGHANGSFLTHRSLSGCPRASLNKKKAKFPGEEYLSTK 1070

  Fly   627 ERES 630
            .|.|
Zfish  1071 FRAS 1074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PitsNP_001138192.1 IRF-2BP1_2 6..57 CDD:288155
zf-C3HC4 548..593 CDD:278524 12/62 (19%)
myt1bXP_017209183.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594281
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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