DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pits and irf2bpl

DIOPT Version :9

Sequence 1:NP_001138192.1 Gene:Pits / 32205 FlyBaseID:FBgn0030400 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_001123823.1 Gene:irf2bpl / 100170574 XenbaseID:XB-GENE-968642 Length:690 Species:Xenopus tropicalis


Alignment Length:757 Identity:234/757 - (30%)
Similarity:295/757 - (38%) Gaps:208/757 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TKRQHCYLCDLPRMPWAMINDFSEAVCRGCVNYEGADRIEAVLDAARQMKRLH------------ 57
            ::||.||||||||||||||.||:|.|||||||||||||||.|:|.|||:||.|            
 Frog     9 SRRQSCYLCDLPRMPWAMIWDFTEPVCRGCVNYEGADRIEFVIDTARQLKRSHSFQDGRSPGPQG 73

  Fly    58 ----PASKQ--------------QRSHENGEVSAAAAAAVVLQQQQQLQVGPVPGQGPGSHRG-- 102
                .|:||              |.:|.:|...||||:.             :...|..:.||  
 Frog    74 PGSGAANKQHPAVQAALTAKDTAQLNHLDGATKAAAASG-------------LERYGLATDRGRF 125

  Fly   103 ---------GGGGGPPGAPPGSGGPGPSGAGSLSSLGNAVAAAAAAAAVHHHHQMPYQMPVPRIG 158
                     .|..|.|  .||..||......|.:|.|..           .|..:|..:|.....
 Frog   126 EYTLTARLPNGLNGFP--KPGEDGPPELNRQSPNSRGRT-----------GHGLIPQLVPGQLSV 177

  Fly   159 PPLDYPVKLEDAPGGGVRPVRISHMTPHHLPPNATRGGGGAPGGGVPTAGSGGGSLPPALSVNLK 223
            ||...|..|.:.|..|         ||...|....||...:.|..||...|..|        :.|
 Frog   178 PPNLLPQTLLNGPPSG---------TPSGAPHVLGRGPASSSGLSVPPTASSSG--------DPK 225

  Fly   224 RP---PSEDVDVDVSQQQQQSGHGLAPDGSAGNSLSAGGGVSGGCPPGIKRSAMDDPSGVGGRPP 285
            ||   .|.|.:.::.::|:.|........|..|......|     .|...|.|:           
 Frog   226 RPGSVSSTDQERELKEKQRNSEALSELTESLRNRAEEWAG-----KPKAVRDAL----------- 274

  Fly   286 LTRGESLPAAVSYVPERQLSGLRDKQQPVRAPSFDASTFKAANPIPNPIPHHLHI-AEHMSPASR 349
            ||.....|..|.:..:..|.|        |..:|||::      .|..:.:.|.: .|:  |:..
 Frog   275 LTLSACTPFDVRFKKDHNLLG--------RVFAFDAAS------KPGLLDYELKLFVEY--PSGL 323

  Fly   350 RNGSSPPSGPLPP--RSVHSPNSSGSSSG--------RRSSGSRHVSSTTVTSS-----EVGGS- 398
            .|..|..||....  :........|.|||        :..||...:....:..|     |:.|: 
 Frog   324 LNVFSSASGVAKQMYQDCMKDFGRGLSSGFKYLEYEKKHGSGDWRLLGDLLPESVRFFKEMVGAD 388

  Fly   399 -------NPG---------------QAVVAGGLGGGGGG-----------GPGSNAASGQ--LGG 428
                   :||               .|..|.....||.|           .|..::|.||  :.|
 Frog   389 MLPQPYLDPGCPMLPSALVNLPRALAAAAAASSSAGGSGQARSGVRKRKPSPEPDSADGQMWITG 453

  Fly   429 PSGGSGQLSCTSGGPGGSASSGSGGNGAIGPASMAPNSVAGDGSP--AGGNGPSGSNGSGGSVNP 491
            ...|..|||..:.|...|:||.:.|..::.|..:.|........|  |..||||.........:.
 Frog   454 QPDGIKQLSMAAAGGTPSSSSAAYGVPSVPPPPLGPGHPQRTTPPESAPPNGPSPMAALQSVTDT 518

  Fly   492 -GPGSSGSQGGGGGGTPLASGGGSA--------------GSGGLGGAPGSSAASNSAAAAAAAAA 541
             |...|...|..||..|:.|...||              |...|....|:.:|..|...|.|..|
 Frog   519 LGTAHSPKDGQTGGVPPVHSTTSSARRNSSSPVSPASVTGQRRLNSRNGAGSADLSLQVAPAGGA 583

  Fly   542 ----------QN---------ATLKCTLCQERLEDTHFVQCPSVNHHKFCFPCSRESIKRQNGLG 587
                      ||         ..|.||:|.||||||||||||||..|||||||||:|||.|...|
 Frog   584 PHPGMDQVHPQNIPDSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRDSIKAQGATG 648

  Fly   588 NEVYCPSGDRCPLANSVIPWAFMQGEITTILGEEVKVKKERE 629
             |||||||::|||..|.:|||||||||.|||..:|||||||:
 Frog   649 -EVYCPSGEKCPLVGSNVPWAFMQGEIATILAGDVKVKKERD 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PitsNP_001138192.1 IRF-2BP1_2 6..57 CDD:288155 41/50 (82%)
zf-C3HC4 548..593 CDD:278524 34/44 (77%)
irf2bplNP_001123823.1 IRF-2BP1_2 11..60 CDD:371437 40/48 (83%)
vRING-HC_IRF2BP1_like 607..662 CDD:319425 42/55 (76%)
variant RING-HC finger (C3HC4-type) 609..658 CDD:319425 38/49 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7214
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 217 1.000 Inparanoid score I3507
OMA 1 1.010 - - QHG46167
OrthoDB 1 1.010 - - D1156771at2759
OrthoFinder 1 1.000 - - FOG0001640
OrthoInspector 1 1.000 - - otm49030
Panther 1 1.100 - - LDO PTHR10816
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3014
SonicParanoid 1 1.000 - - X1040
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.200

Return to query results.
Submit another query.