DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hwt and Shb

DIOPT Version :9

Sequence 1:NP_001259484.1 Gene:hwt / 32202 FlyBaseID:FBgn0264542 Length:1768 Species:Drosophila melanogaster
Sequence 2:XP_006238210.1 Gene:Shb / 362513 RGDID:1565350 Length:501 Species:Rattus norvegicus


Alignment Length:574 Identity:144/574 - (25%)
Similarity:223/574 - (38%) Gaps:179/574 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1268 GSRRNRHGQSQGQTTGGGHNYSSTESIATSSSGGSMESLRSSTSEGNRSTSSSESRH-------- 1324
            |.||.:..|:..|..........:.:...|:|.||:.....|||:..|:..:.:.|.        
  Rat    34 GERREQPPQAVPQACSASSASCGSAAACFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGP 98

  Fly  1325 SSSLSSHSSE---SGSGGSGGSGGSSVAYPLRPAPLLLHSKLHILSPISDKSSQEPASASASEQS 1386
            .|||....:.   ...||.|..||...|:                          .|:|.|    
  Rat    99 GSSLRKLRAMCRLDYCGGGGDPGGGQRAF--------------------------TAAAGA---- 133

  Fly  1387 QQPSQQLAPMASQEDDSTTSG---APAGNQVQVNASLKQPRSNRGAPNKALLQLADELLGSDSGI 1448
                               :|   |.||.....::|     |:.|:|:                 
  Rat   134 -------------------AGCCCAAAGAGAAASSS-----SSSGSPH----------------- 157

  Fly  1449 SLHSREDGKPQALALQRLTLPKLQLIGAEGTTTSATASGAGGSSATGGSSG--------AGGSGS 1505
            ...|..:.:|...|..|...||.:||..|       ::||.|....|..||        .||...
  Rat   158 LYRSSSERRPATPAEVRYISPKHRLIKVE-------SAGAAGDPPGGVCSGGRTWSPTTCGGKKL 215

  Fly  1506 GSVVASGSTG--------IQQDLRDLPFDMPKLRRRKTLQQEAACTSGSATSVDLGELPFDMPKL 1562
            .:..|:..||        |..|..| |||     .:..|:.:|    |...|....| |::..::
  Rat   216 LNKCAAEETGAGQKDKVTIADDYSD-PFD-----AKNDLKSKA----GKGESAGYME-PYEAQRI 269

  Fly  1563 R---RRLRANQAEINNLLMHST--ESSGISQASSSHSM-----------RDDQKMSSKLDTALFR 1611
            .   :|..:.:::...:.::.|  |..|.|..|.|.|.           :||.:.:.:.|.....
  Rat   270 MTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSLRLRESKLPQDDDRPADEYDQPWEW 334

  Fly  1612 QNLTL-------NLNESRQATK--------------------QFGSLDLRGLNSNKELNMNLSQG 1649
            ..:|:       |.||.||::.                    :.||.:..|:...:         
  Rat   335 NRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGER--------- 390

  Fly  1650 YVTAVDLIDVTIPLERQGWYHGAITRIEAETTLRPLSEGSFLVRNCESTKQDYSLSLKGAKGFMH 1714
                   :|.|||||:|.||||||:|.:||..||...|.|:||||.:::|.|||||||..:||||
  Rat   391 -------VDPTIPLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMH 448

  Fly  1715 MRIQRNETGQYILGQFSRPFETVPEMIRHFCLNRLPVRGAEHMCLIEPVIAQLL 1768
            |::.:.: .:|:|||.|.||::|||:|.::...:||::||||:.|:.||..:.|
  Rat   449 MKLAKTK-DKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hwtNP_001259484.1 SH2_SHB_SHD_SHE_SHF_like 1666..1763 CDD:198198 49/96 (51%)
ShbXP_006238210.1 SH2_SHB 400..496 CDD:198252 49/96 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 89 1.000 Domainoid score I7663
eggNOG 1 0.900 - - E1_28M87
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001120
OrthoInspector 1 1.000 - - otm44638
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15127
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.870

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