DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hwt and shb

DIOPT Version :9

Sequence 1:NP_001259484.1 Gene:hwt / 32202 FlyBaseID:FBgn0264542 Length:1768 Species:Drosophila melanogaster
Sequence 2:XP_002936369.1 Gene:shb / 100489262 XenbaseID:XB-GENE-6258291 Length:493 Species:Xenopus tropicalis


Alignment Length:638 Identity:145/638 - (22%)
Similarity:236/638 - (36%) Gaps:231/638 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1205 NSNSNAASASASASVSATGSAAPRRP---------RSFVLESGRVLELRRSAQGHQGGQSTHHHH 1260
            |:|:|.:.:...          |.||         |||.|:             :.|||. ..:.
 Frog    13 NNNNNKSKSPPQ----------PPRPDYKRNGGTERSFHLQ-------------YPGGQQ-QFYK 53

  Fly  1261 HHHHHAPGSRRNRHGQSQGQTTGGGHNYSSTESIATSSSGGSMESLRSSTSEGNRSTSSSESRHS 1325
            ||....||..|......:........::..    ..:..|.|:..||:...|             
 Frog    54 HHTSPLPGHCREESDLIRAYRAQKDRDFED----PYNGPGSSLRKLRAMCRE------------- 101

  Fly  1326 SSLSSHSSESGSGGSGGSGGSSVAYPLRPAPLLLHSKLHILSPISDKSSQEPASASASEQSQQPS 1390
                   .:.|.|..|.:.|::         ..|....|     ...||....|:|:|..|....
 Frog   102 -------EQQGEGRRGCTDGTN---------CFLQESYH-----GGGSSTNTTSSSSSSSSSPHL 145

  Fly  1391 QQLAPMASQEDDSTTSGAPAGNQVQVNASLKQPRSNRGAPNKALLQLADELLGSDSGISLHSRED 1455
            .:          |.:...|||.:.|:..         |:.:|.::.                   
 Frog   146 YR----------SNSERRPAGAKQQLTG---------GSEHKYMVS------------------- 172

  Fly  1456 GKPQALALQRLTLPKLQLIGAEGTTTSATASGAGGSSATGGSSGAGGSGSGSV------------ 1508
                         ||.:||..:              |...|.:|.||.|:|:|            
 Frog   173 -------------PKHRLIKID--------------SCGWGENGTGGGGAGTVGITWSPVVTPVT 210

  Fly  1509 ---VASGSTG-------IQQDLRDLPFDMPKLRRRKTLQQEAACTSGSATSVDLGELPFDMPKLR 1563
               ...|:.|       |..|..| |||....::.|.::.|   .:|...       |::..:|.
 Frog   211 NKTEEQGNPGAKKEKVIIADDYSD-PFDAKSEQKIKGIKTE---NNGYME-------PYEAQRLM 264

  Fly  1564 RRLRANQAEIN---NLLMHST----ESSGISQASSSHSM-----------RDDQKMSSKLD---- 1606
            ..::.|:::.:   |:.::.|    ||:|:.  |.|.|:           :||.:.:.:.|    
 Frog   265 TDIQKNESQKSLQKNIQLYDTPYEPESNGVE--SDSESIVGLKLRESKLPQDDDRPADEYDQPWE 327

  Fly  1607 --------TALFR-----QNLTLNLNESRQATK--------QFGSLDLRGLNSNKELNMNLSQGY 1650
                    .|.|.     |:|:.:.:..||...        :.||.|:.|:...:          
 Frog   328 WNKALPALAAQFNGGEKMQSLSPSNDRRRQLRAPGGGFKPIKHGSPDVCGILGER---------- 382

  Fly  1651 VTAVDLIDVTIPLERQGWYHGAITRIEAETTLRPLSEGSFLVRNCESTKQDYSLSLKGAKGFMHM 1715
                  :|..|.||:|.||||||:|.:||..||...|.|:||||.:::|.|:|||||.::|||||
 Frog   383 ------VDPNIALEKQIWYHGAISRTDAENLLRLCKECSYLVRNSQTSKHDFSLSLKSSQGFMHM 441

  Fly  1716 RIQRNETGQYILGQFSRPFETVPEMIRHFCLNRLPVRGAEHMCLIEPVIAQLL 1768
            ::.:.:. :|||||.|.|||:|||::..:...:||::||||:.|:.||..:.|
 Frog   442 KLSKTKE-KYILGQNSPPFESVPEVVHFYTTRKLPIKGAEHLSLLYPVPVRTL 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hwtNP_001259484.1 SH2_SHB_SHD_SHE_SHF_like 1666..1763 CDD:198198 49/96 (51%)
shbXP_002936369.1 SH2 392..488 CDD:387587 49/96 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 95 1.000 Domainoid score I7290
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001120
OrthoInspector 1 1.000 - - otm47680
Panther 1 1.100 - - O PTHR15127
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.010

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