DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab40 and Rab27b

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_445911.1 Gene:Rab27b / 84590 RGDID:620114 Length:218 Species:Rattus norvegicus


Alignment Length:187 Identity:62/187 - (33%)
Similarity:96/187 - (51%) Gaps:18/187 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCS--GNDCTSHILQTVAYKTTTILLEGK--- 66
            |||||:|:|.:|||.|||...|....|......|.:  |.|...   :.|.|.|..  .:|.   
  Rat     5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFRE---KRVVYDTQG--ADGSSGK 64

  Fly    67 --RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA----PGIP 125
              :|.||||||:||.||.::..::.|.|.|.:|::|:|::.||..:..|:.::..:|    |.| 
  Rat    65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI- 128

  Fly   126 KVLVGNRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHR 182
             ||:||:..|..:|:|..:||...|.:..:..||.|.....|:.:|...|..:.:.|
  Rat   129 -VLIGNKADLLDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 62/187 (33%)
SOCS 192..234 CDD:470605
Rab27bNP_445911.1 Rab27A 6..185 CDD:206700 61/186 (33%)
Effector region. /evidence=ECO:0000250 38..46 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.