DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and RAB8

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_190929.1 Gene:RAB8 / 824529 AraportID:AT3G53610 Length:216 Species:Arabidopsis thaliana


Alignment Length:174 Identity:74/174 - (42%)
Similarity:105/174 - (60%) Gaps:12/174 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQT-VAYKTTTILLEGKRVKL 70
            |||||:|:||:|||.|||..:|....|         |:..||.|... :.:|..||.|:|||:||
plant    11 DYDYLIKLLLIGDSGVGKSCLLLRFSD---------GSFTTSFITTIGIDFKIRTIELDGKRIKL 66

  Fly    71 QLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA-PGIPKVLVGNRLH 134
            |:|||:||.||.||..:|.|||.||:||||:|::.||:.|..|::.:::|| ..:.|:||||:..
plant    67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKAD 131

  Fly   135 L-AFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177
            : ..||.|...:.:..|....|..||.|...|.|:.|.|..:|:
plant   132 MDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAK 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 74/174 (43%)
SOCS 192..234 CDD:470605
RAB8NP_190929.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 72/172 (42%)
Blue background indicates that the domain is not in the aligned region.

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